Cargando…
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/), which is develo...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061942/ https://www.ncbi.nlm.nih.gov/pubmed/31713622 http://dx.doi.org/10.1093/nar/gkz1062 |
_version_ | 1783504467047481344 |
---|---|
author | Luo, Yunhai Hitz, Benjamin C Gabdank, Idan Hilton, Jason A Kagda, Meenakshi S Lam, Bonita Myers, Zachary Sud, Paul Jou, Jennifer Lin, Khine Baymuradov, Ulugbek K Graham, Keenan Litton, Casey Miyasato, Stuart R Strattan, J Seth Jolanki, Otto Lee, Jin-Wook Tanaka, Forrest Y Adenekan, Philip O’Neill, Emma Cherry, J Michael |
author_facet | Luo, Yunhai Hitz, Benjamin C Gabdank, Idan Hilton, Jason A Kagda, Meenakshi S Lam, Bonita Myers, Zachary Sud, Paul Jou, Jennifer Lin, Khine Baymuradov, Ulugbek K Graham, Keenan Litton, Casey Miyasato, Stuart R Strattan, J Seth Jolanki, Otto Lee, Jin-Wook Tanaka, Forrest Y Adenekan, Philip O’Neill, Emma Cherry, J Michael |
author_sort | Luo, Yunhai |
collection | PubMed |
description | The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/), which is developed and maintained by the ENCODE Data Coordinating Center (DCC). Since the initial portal release in 2013, the ENCODE DCC has updated the portal to make ENCODE data more findable, accessible, interoperable and reusable. Here, we report on recent updates, including new ENCODE data and assays, ENCODE uniform data processing pipelines, new visualization tools, a dataset cart feature, unrestricted public access to ENCODE data on the cloud (Amazon Web Services open data registry, https://registry.opendata.aws/encode-project/) and more comprehensive tutorials and documentation. |
format | Online Article Text |
id | pubmed-7061942 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-70619422020-03-13 New developments on the Encyclopedia of DNA Elements (ENCODE) data portal Luo, Yunhai Hitz, Benjamin C Gabdank, Idan Hilton, Jason A Kagda, Meenakshi S Lam, Bonita Myers, Zachary Sud, Paul Jou, Jennifer Lin, Khine Baymuradov, Ulugbek K Graham, Keenan Litton, Casey Miyasato, Stuart R Strattan, J Seth Jolanki, Otto Lee, Jin-Wook Tanaka, Forrest Y Adenekan, Philip O’Neill, Emma Cherry, J Michael Nucleic Acids Res Database Issue The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/), which is developed and maintained by the ENCODE Data Coordinating Center (DCC). Since the initial portal release in 2013, the ENCODE DCC has updated the portal to make ENCODE data more findable, accessible, interoperable and reusable. Here, we report on recent updates, including new ENCODE data and assays, ENCODE uniform data processing pipelines, new visualization tools, a dataset cart feature, unrestricted public access to ENCODE data on the cloud (Amazon Web Services open data registry, https://registry.opendata.aws/encode-project/) and more comprehensive tutorials and documentation. Oxford University Press 2020-01-08 2019-11-12 /pmc/articles/PMC7061942/ /pubmed/31713622 http://dx.doi.org/10.1093/nar/gkz1062 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Luo, Yunhai Hitz, Benjamin C Gabdank, Idan Hilton, Jason A Kagda, Meenakshi S Lam, Bonita Myers, Zachary Sud, Paul Jou, Jennifer Lin, Khine Baymuradov, Ulugbek K Graham, Keenan Litton, Casey Miyasato, Stuart R Strattan, J Seth Jolanki, Otto Lee, Jin-Wook Tanaka, Forrest Y Adenekan, Philip O’Neill, Emma Cherry, J Michael New developments on the Encyclopedia of DNA Elements (ENCODE) data portal |
title | New developments on the Encyclopedia of DNA Elements (ENCODE) data portal |
title_full | New developments on the Encyclopedia of DNA Elements (ENCODE) data portal |
title_fullStr | New developments on the Encyclopedia of DNA Elements (ENCODE) data portal |
title_full_unstemmed | New developments on the Encyclopedia of DNA Elements (ENCODE) data portal |
title_short | New developments on the Encyclopedia of DNA Elements (ENCODE) data portal |
title_sort | new developments on the encyclopedia of dna elements (encode) data portal |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061942/ https://www.ncbi.nlm.nih.gov/pubmed/31713622 http://dx.doi.org/10.1093/nar/gkz1062 |
work_keys_str_mv | AT luoyunhai newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT hitzbenjaminc newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT gabdankidan newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT hiltonjasona newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT kagdameenakshis newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT lambonita newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT myerszachary newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT sudpaul newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT joujennifer newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT linkhine newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT baymuradovulugbekk newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT grahamkeenan newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT littoncasey newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT miyasatostuartr newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT strattanjseth newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT jolankiotto newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT leejinwook newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT tanakaforresty newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT adenekanphilip newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT oneillemma newdevelopmentsontheencyclopediaofdnaelementsencodedataportal AT cherryjmichael newdevelopmentsontheencyclopediaofdnaelementsencodedataportal |