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New developments on the Encyclopedia of DNA Elements (ENCODE) data portal

The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/), which is develo...

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Autores principales: Luo, Yunhai, Hitz, Benjamin C, Gabdank, Idan, Hilton, Jason A, Kagda, Meenakshi S, Lam, Bonita, Myers, Zachary, Sud, Paul, Jou, Jennifer, Lin, Khine, Baymuradov, Ulugbek K, Graham, Keenan, Litton, Casey, Miyasato, Stuart R, Strattan, J Seth, Jolanki, Otto, Lee, Jin-Wook, Tanaka, Forrest Y, Adenekan, Philip, O’Neill, Emma, Cherry, J Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061942/
https://www.ncbi.nlm.nih.gov/pubmed/31713622
http://dx.doi.org/10.1093/nar/gkz1062
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author Luo, Yunhai
Hitz, Benjamin C
Gabdank, Idan
Hilton, Jason A
Kagda, Meenakshi S
Lam, Bonita
Myers, Zachary
Sud, Paul
Jou, Jennifer
Lin, Khine
Baymuradov, Ulugbek K
Graham, Keenan
Litton, Casey
Miyasato, Stuart R
Strattan, J Seth
Jolanki, Otto
Lee, Jin-Wook
Tanaka, Forrest Y
Adenekan, Philip
O’Neill, Emma
Cherry, J Michael
author_facet Luo, Yunhai
Hitz, Benjamin C
Gabdank, Idan
Hilton, Jason A
Kagda, Meenakshi S
Lam, Bonita
Myers, Zachary
Sud, Paul
Jou, Jennifer
Lin, Khine
Baymuradov, Ulugbek K
Graham, Keenan
Litton, Casey
Miyasato, Stuart R
Strattan, J Seth
Jolanki, Otto
Lee, Jin-Wook
Tanaka, Forrest Y
Adenekan, Philip
O’Neill, Emma
Cherry, J Michael
author_sort Luo, Yunhai
collection PubMed
description The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/), which is developed and maintained by the ENCODE Data Coordinating Center (DCC). Since the initial portal release in 2013, the ENCODE DCC has updated the portal to make ENCODE data more findable, accessible, interoperable and reusable. Here, we report on recent updates, including new ENCODE data and assays, ENCODE uniform data processing pipelines, new visualization tools, a dataset cart feature, unrestricted public access to ENCODE data on the cloud (Amazon Web Services open data registry, https://registry.opendata.aws/encode-project/) and more comprehensive tutorials and documentation.
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spelling pubmed-70619422020-03-13 New developments on the Encyclopedia of DNA Elements (ENCODE) data portal Luo, Yunhai Hitz, Benjamin C Gabdank, Idan Hilton, Jason A Kagda, Meenakshi S Lam, Bonita Myers, Zachary Sud, Paul Jou, Jennifer Lin, Khine Baymuradov, Ulugbek K Graham, Keenan Litton, Casey Miyasato, Stuart R Strattan, J Seth Jolanki, Otto Lee, Jin-Wook Tanaka, Forrest Y Adenekan, Philip O’Neill, Emma Cherry, J Michael Nucleic Acids Res Database Issue The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https://www.encodeproject.org/), which is developed and maintained by the ENCODE Data Coordinating Center (DCC). Since the initial portal release in 2013, the ENCODE DCC has updated the portal to make ENCODE data more findable, accessible, interoperable and reusable. Here, we report on recent updates, including new ENCODE data and assays, ENCODE uniform data processing pipelines, new visualization tools, a dataset cart feature, unrestricted public access to ENCODE data on the cloud (Amazon Web Services open data registry, https://registry.opendata.aws/encode-project/) and more comprehensive tutorials and documentation. Oxford University Press 2020-01-08 2019-11-12 /pmc/articles/PMC7061942/ /pubmed/31713622 http://dx.doi.org/10.1093/nar/gkz1062 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Luo, Yunhai
Hitz, Benjamin C
Gabdank, Idan
Hilton, Jason A
Kagda, Meenakshi S
Lam, Bonita
Myers, Zachary
Sud, Paul
Jou, Jennifer
Lin, Khine
Baymuradov, Ulugbek K
Graham, Keenan
Litton, Casey
Miyasato, Stuart R
Strattan, J Seth
Jolanki, Otto
Lee, Jin-Wook
Tanaka, Forrest Y
Adenekan, Philip
O’Neill, Emma
Cherry, J Michael
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
title New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
title_full New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
title_fullStr New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
title_full_unstemmed New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
title_short New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
title_sort new developments on the encyclopedia of dna elements (encode) data portal
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061942/
https://www.ncbi.nlm.nih.gov/pubmed/31713622
http://dx.doi.org/10.1093/nar/gkz1062
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