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Micro-structure diffusion scalar measures from reduced MRI acquisitions

In diffusion MRI, the Ensemble Average diffusion Propagator (EAP) provides relevant micro-structural information and meaningful descriptive maps of the white matter previously obscured by traditional techniques like Diffusion Tensor Imaging (DTI). The direct estimation of the EAP, however, requires...

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Autores principales: Aja-Fernández, Santiago, de Luis-García, Rodrigo, Afzali, Maryam, Molendowska, Malwina, Pieciak, Tomasz, Tristán-Vega, Antonio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062271/
https://www.ncbi.nlm.nih.gov/pubmed/32150547
http://dx.doi.org/10.1371/journal.pone.0229526
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author Aja-Fernández, Santiago
de Luis-García, Rodrigo
Afzali, Maryam
Molendowska, Malwina
Pieciak, Tomasz
Tristán-Vega, Antonio
author_facet Aja-Fernández, Santiago
de Luis-García, Rodrigo
Afzali, Maryam
Molendowska, Malwina
Pieciak, Tomasz
Tristán-Vega, Antonio
author_sort Aja-Fernández, Santiago
collection PubMed
description In diffusion MRI, the Ensemble Average diffusion Propagator (EAP) provides relevant micro-structural information and meaningful descriptive maps of the white matter previously obscured by traditional techniques like Diffusion Tensor Imaging (DTI). The direct estimation of the EAP, however, requires a dense sampling of the Cartesian q-space involving a huge amount of samples (diffusion gradients) for proper reconstruction. A collection of more efficient techniques have been proposed in the last decade based on parametric representations of the EAP, but they still imply acquiring a large number of diffusion gradients with different b-values (shells). Paradoxically, this has come together with an effort to find scalar measures gathering all the q-space micro-structural information probed in one single index or set of indices. Among them, the return-to-origin (RTOP), return-to-plane (RTPP), and return-to-axis (RTAP) probabilities have rapidly gained popularity. In this work, we propose the so-called “Apparent Measures Using Reduced Acquisitions” (AMURA) aimed at computing scalar indices that can mimic the sensitivity of state of the art EAP-based measures to micro-structural changes. AMURA drastically reduces both the number of samples needed and the computational complexity of the estimation of diffusion properties by assuming the diffusion anisotropy is roughly independent from the radial direction. This simplification allows us to compute closed-form expressions from single-shell information, so that AMURA remains compatible with standard acquisition protocols commonly used even in clinical practice. Additionally, the analytical form of AMURA-based measures, as opposed to the iterative, non-linear reconstruction ubiquitous to full EAP techniques, turns the newly introduced apparent RTOP, RTPP, and RTAP both robust and efficient to compute.
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spelling pubmed-70622712020-03-23 Micro-structure diffusion scalar measures from reduced MRI acquisitions Aja-Fernández, Santiago de Luis-García, Rodrigo Afzali, Maryam Molendowska, Malwina Pieciak, Tomasz Tristán-Vega, Antonio PLoS One Research Article In diffusion MRI, the Ensemble Average diffusion Propagator (EAP) provides relevant micro-structural information and meaningful descriptive maps of the white matter previously obscured by traditional techniques like Diffusion Tensor Imaging (DTI). The direct estimation of the EAP, however, requires a dense sampling of the Cartesian q-space involving a huge amount of samples (diffusion gradients) for proper reconstruction. A collection of more efficient techniques have been proposed in the last decade based on parametric representations of the EAP, but they still imply acquiring a large number of diffusion gradients with different b-values (shells). Paradoxically, this has come together with an effort to find scalar measures gathering all the q-space micro-structural information probed in one single index or set of indices. Among them, the return-to-origin (RTOP), return-to-plane (RTPP), and return-to-axis (RTAP) probabilities have rapidly gained popularity. In this work, we propose the so-called “Apparent Measures Using Reduced Acquisitions” (AMURA) aimed at computing scalar indices that can mimic the sensitivity of state of the art EAP-based measures to micro-structural changes. AMURA drastically reduces both the number of samples needed and the computational complexity of the estimation of diffusion properties by assuming the diffusion anisotropy is roughly independent from the radial direction. This simplification allows us to compute closed-form expressions from single-shell information, so that AMURA remains compatible with standard acquisition protocols commonly used even in clinical practice. Additionally, the analytical form of AMURA-based measures, as opposed to the iterative, non-linear reconstruction ubiquitous to full EAP techniques, turns the newly introduced apparent RTOP, RTPP, and RTAP both robust and efficient to compute. Public Library of Science 2020-03-09 /pmc/articles/PMC7062271/ /pubmed/32150547 http://dx.doi.org/10.1371/journal.pone.0229526 Text en © 2020 Aja-Fernández et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Aja-Fernández, Santiago
de Luis-García, Rodrigo
Afzali, Maryam
Molendowska, Malwina
Pieciak, Tomasz
Tristán-Vega, Antonio
Micro-structure diffusion scalar measures from reduced MRI acquisitions
title Micro-structure diffusion scalar measures from reduced MRI acquisitions
title_full Micro-structure diffusion scalar measures from reduced MRI acquisitions
title_fullStr Micro-structure diffusion scalar measures from reduced MRI acquisitions
title_full_unstemmed Micro-structure diffusion scalar measures from reduced MRI acquisitions
title_short Micro-structure diffusion scalar measures from reduced MRI acquisitions
title_sort micro-structure diffusion scalar measures from reduced mri acquisitions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062271/
https://www.ncbi.nlm.nih.gov/pubmed/32150547
http://dx.doi.org/10.1371/journal.pone.0229526
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