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Inference of nonlinear receptive field subunits with spike-triggered clustering

Responses of sensory neurons are often modeled using a weighted combination of rectified linear subunits. Since these subunits often cannot be measured directly, a flexible method is needed to infer their properties from the responses of downstream neurons. We present a method for maximum likelihood...

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Autores principales: Shah, Nishal P, Brackbill, Nora, Rhoades, Colleen, Kling, Alexandra, Goetz, Georges, Litke, Alan M, Sher, Alexander, Simoncelli, Eero P, Chichilnisky, EJ
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062463/
https://www.ncbi.nlm.nih.gov/pubmed/32149600
http://dx.doi.org/10.7554/eLife.45743
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author Shah, Nishal P
Brackbill, Nora
Rhoades, Colleen
Kling, Alexandra
Goetz, Georges
Litke, Alan M
Sher, Alexander
Simoncelli, Eero P
Chichilnisky, EJ
author_facet Shah, Nishal P
Brackbill, Nora
Rhoades, Colleen
Kling, Alexandra
Goetz, Georges
Litke, Alan M
Sher, Alexander
Simoncelli, Eero P
Chichilnisky, EJ
author_sort Shah, Nishal P
collection PubMed
description Responses of sensory neurons are often modeled using a weighted combination of rectified linear subunits. Since these subunits often cannot be measured directly, a flexible method is needed to infer their properties from the responses of downstream neurons. We present a method for maximum likelihood estimation of subunits by soft-clustering spike-triggered stimuli, and demonstrate its effectiveness in visual neurons. For parasol retinal ganglion cells in macaque retina, estimated subunits partitioned the receptive field into compact regions, likely representing aggregated bipolar cell inputs. Joint clustering revealed shared subunits between neighboring cells, producing a parsimonious population model. Closed-loop validation, using stimuli lying in the null space of the linear receptive field, revealed stronger nonlinearities in OFF cells than ON cells. Responses to natural images, jittered to emulate fixational eye movements, were accurately predicted by the subunit model. Finally, the generality of the approach was demonstrated in macaque V1 neurons.
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spelling pubmed-70624632020-03-11 Inference of nonlinear receptive field subunits with spike-triggered clustering Shah, Nishal P Brackbill, Nora Rhoades, Colleen Kling, Alexandra Goetz, Georges Litke, Alan M Sher, Alexander Simoncelli, Eero P Chichilnisky, EJ eLife Neuroscience Responses of sensory neurons are often modeled using a weighted combination of rectified linear subunits. Since these subunits often cannot be measured directly, a flexible method is needed to infer their properties from the responses of downstream neurons. We present a method for maximum likelihood estimation of subunits by soft-clustering spike-triggered stimuli, and demonstrate its effectiveness in visual neurons. For parasol retinal ganglion cells in macaque retina, estimated subunits partitioned the receptive field into compact regions, likely representing aggregated bipolar cell inputs. Joint clustering revealed shared subunits between neighboring cells, producing a parsimonious population model. Closed-loop validation, using stimuli lying in the null space of the linear receptive field, revealed stronger nonlinearities in OFF cells than ON cells. Responses to natural images, jittered to emulate fixational eye movements, were accurately predicted by the subunit model. Finally, the generality of the approach was demonstrated in macaque V1 neurons. eLife Sciences Publications, Ltd 2020-03-09 /pmc/articles/PMC7062463/ /pubmed/32149600 http://dx.doi.org/10.7554/eLife.45743 Text en © 2020, Shah et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Neuroscience
Shah, Nishal P
Brackbill, Nora
Rhoades, Colleen
Kling, Alexandra
Goetz, Georges
Litke, Alan M
Sher, Alexander
Simoncelli, Eero P
Chichilnisky, EJ
Inference of nonlinear receptive field subunits with spike-triggered clustering
title Inference of nonlinear receptive field subunits with spike-triggered clustering
title_full Inference of nonlinear receptive field subunits with spike-triggered clustering
title_fullStr Inference of nonlinear receptive field subunits with spike-triggered clustering
title_full_unstemmed Inference of nonlinear receptive field subunits with spike-triggered clustering
title_short Inference of nonlinear receptive field subunits with spike-triggered clustering
title_sort inference of nonlinear receptive field subunits with spike-triggered clustering
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062463/
https://www.ncbi.nlm.nih.gov/pubmed/32149600
http://dx.doi.org/10.7554/eLife.45743
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