Cargando…
Inference of nonlinear receptive field subunits with spike-triggered clustering
Responses of sensory neurons are often modeled using a weighted combination of rectified linear subunits. Since these subunits often cannot be measured directly, a flexible method is needed to infer their properties from the responses of downstream neurons. We present a method for maximum likelihood...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062463/ https://www.ncbi.nlm.nih.gov/pubmed/32149600 http://dx.doi.org/10.7554/eLife.45743 |
_version_ | 1783504528749887488 |
---|---|
author | Shah, Nishal P Brackbill, Nora Rhoades, Colleen Kling, Alexandra Goetz, Georges Litke, Alan M Sher, Alexander Simoncelli, Eero P Chichilnisky, EJ |
author_facet | Shah, Nishal P Brackbill, Nora Rhoades, Colleen Kling, Alexandra Goetz, Georges Litke, Alan M Sher, Alexander Simoncelli, Eero P Chichilnisky, EJ |
author_sort | Shah, Nishal P |
collection | PubMed |
description | Responses of sensory neurons are often modeled using a weighted combination of rectified linear subunits. Since these subunits often cannot be measured directly, a flexible method is needed to infer their properties from the responses of downstream neurons. We present a method for maximum likelihood estimation of subunits by soft-clustering spike-triggered stimuli, and demonstrate its effectiveness in visual neurons. For parasol retinal ganglion cells in macaque retina, estimated subunits partitioned the receptive field into compact regions, likely representing aggregated bipolar cell inputs. Joint clustering revealed shared subunits between neighboring cells, producing a parsimonious population model. Closed-loop validation, using stimuli lying in the null space of the linear receptive field, revealed stronger nonlinearities in OFF cells than ON cells. Responses to natural images, jittered to emulate fixational eye movements, were accurately predicted by the subunit model. Finally, the generality of the approach was demonstrated in macaque V1 neurons. |
format | Online Article Text |
id | pubmed-7062463 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-70624632020-03-11 Inference of nonlinear receptive field subunits with spike-triggered clustering Shah, Nishal P Brackbill, Nora Rhoades, Colleen Kling, Alexandra Goetz, Georges Litke, Alan M Sher, Alexander Simoncelli, Eero P Chichilnisky, EJ eLife Neuroscience Responses of sensory neurons are often modeled using a weighted combination of rectified linear subunits. Since these subunits often cannot be measured directly, a flexible method is needed to infer their properties from the responses of downstream neurons. We present a method for maximum likelihood estimation of subunits by soft-clustering spike-triggered stimuli, and demonstrate its effectiveness in visual neurons. For parasol retinal ganglion cells in macaque retina, estimated subunits partitioned the receptive field into compact regions, likely representing aggregated bipolar cell inputs. Joint clustering revealed shared subunits between neighboring cells, producing a parsimonious population model. Closed-loop validation, using stimuli lying in the null space of the linear receptive field, revealed stronger nonlinearities in OFF cells than ON cells. Responses to natural images, jittered to emulate fixational eye movements, were accurately predicted by the subunit model. Finally, the generality of the approach was demonstrated in macaque V1 neurons. eLife Sciences Publications, Ltd 2020-03-09 /pmc/articles/PMC7062463/ /pubmed/32149600 http://dx.doi.org/10.7554/eLife.45743 Text en © 2020, Shah et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Neuroscience Shah, Nishal P Brackbill, Nora Rhoades, Colleen Kling, Alexandra Goetz, Georges Litke, Alan M Sher, Alexander Simoncelli, Eero P Chichilnisky, EJ Inference of nonlinear receptive field subunits with spike-triggered clustering |
title | Inference of nonlinear receptive field subunits with spike-triggered clustering |
title_full | Inference of nonlinear receptive field subunits with spike-triggered clustering |
title_fullStr | Inference of nonlinear receptive field subunits with spike-triggered clustering |
title_full_unstemmed | Inference of nonlinear receptive field subunits with spike-triggered clustering |
title_short | Inference of nonlinear receptive field subunits with spike-triggered clustering |
title_sort | inference of nonlinear receptive field subunits with spike-triggered clustering |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062463/ https://www.ncbi.nlm.nih.gov/pubmed/32149600 http://dx.doi.org/10.7554/eLife.45743 |
work_keys_str_mv | AT shahnishalp inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering AT brackbillnora inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering AT rhoadescolleen inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering AT klingalexandra inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering AT goetzgeorges inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering AT litkealanm inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering AT sheralexander inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering AT simoncellieerop inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering AT chichilniskyej inferenceofnonlinearreceptivefieldsubunitswithspiketriggeredclustering |