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Diffuse X-ray scattering from correlated motions in a protein crystal
Protein dynamics are integral to biological function, yet few techniques are sensitive to collective atomic motions. A long-standing goal of X-ray crystallography has been to combine structural information from Bragg diffraction with dynamic information contained in the diffuse scattering background...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062842/ https://www.ncbi.nlm.nih.gov/pubmed/32152274 http://dx.doi.org/10.1038/s41467-020-14933-6 |
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author | Meisburger, Steve P. Case, David A. Ando, Nozomi |
author_facet | Meisburger, Steve P. Case, David A. Ando, Nozomi |
author_sort | Meisburger, Steve P. |
collection | PubMed |
description | Protein dynamics are integral to biological function, yet few techniques are sensitive to collective atomic motions. A long-standing goal of X-ray crystallography has been to combine structural information from Bragg diffraction with dynamic information contained in the diffuse scattering background. However, the origin of macromolecular diffuse scattering has been poorly understood, limiting its applicability. We present a finely sampled diffuse scattering map from triclinic lysozyme with unprecedented accuracy and detail, clearly resolving both the inter- and intramolecular correlations. These correlations are studied theoretically using both all-atom molecular dynamics and simple vibrational models. Although lattice dynamics reproduce most of the diffuse pattern, protein internal dynamics, which include hinge-bending motions, are needed to explain the short-ranged correlations revealed by Patterson analysis. These insights lay the groundwork for animating crystal structures with biochemically relevant motions. |
format | Online Article Text |
id | pubmed-7062842 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70628422020-03-18 Diffuse X-ray scattering from correlated motions in a protein crystal Meisburger, Steve P. Case, David A. Ando, Nozomi Nat Commun Article Protein dynamics are integral to biological function, yet few techniques are sensitive to collective atomic motions. A long-standing goal of X-ray crystallography has been to combine structural information from Bragg diffraction with dynamic information contained in the diffuse scattering background. However, the origin of macromolecular diffuse scattering has been poorly understood, limiting its applicability. We present a finely sampled diffuse scattering map from triclinic lysozyme with unprecedented accuracy and detail, clearly resolving both the inter- and intramolecular correlations. These correlations are studied theoretically using both all-atom molecular dynamics and simple vibrational models. Although lattice dynamics reproduce most of the diffuse pattern, protein internal dynamics, which include hinge-bending motions, are needed to explain the short-ranged correlations revealed by Patterson analysis. These insights lay the groundwork for animating crystal structures with biochemically relevant motions. Nature Publishing Group UK 2020-03-09 /pmc/articles/PMC7062842/ /pubmed/32152274 http://dx.doi.org/10.1038/s41467-020-14933-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Meisburger, Steve P. Case, David A. Ando, Nozomi Diffuse X-ray scattering from correlated motions in a protein crystal |
title | Diffuse X-ray scattering from correlated motions in a protein crystal |
title_full | Diffuse X-ray scattering from correlated motions in a protein crystal |
title_fullStr | Diffuse X-ray scattering from correlated motions in a protein crystal |
title_full_unstemmed | Diffuse X-ray scattering from correlated motions in a protein crystal |
title_short | Diffuse X-ray scattering from correlated motions in a protein crystal |
title_sort | diffuse x-ray scattering from correlated motions in a protein crystal |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062842/ https://www.ncbi.nlm.nih.gov/pubmed/32152274 http://dx.doi.org/10.1038/s41467-020-14933-6 |
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