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Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study

Whole body lean mass (WBLM) is a heritable trait predicting sarcopenia. To identify genomic locus underlying WBLM, we performed a genome-wide association study of fat-adjusted WBLM in the Framingham Heart Study (FHS, N = 6,004), and replicated in the Kansas City Osteoporosis Study (KCOS, N = 2,207)....

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Autores principales: Ran, Shu, Zhang, Yu-Xue, Liu, Lu, Jiang, Zi-Xuan, He, Xiao, Liu, Yu, Shen, Hui, Tian, Qing, Pei, Yu-Fang, Deng, Hong-Wen, Zhang, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062907/
https://www.ncbi.nlm.nih.gov/pubmed/32152362
http://dx.doi.org/10.1038/s41598-020-61272-z
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author Ran, Shu
Zhang, Yu-Xue
Liu, Lu
Jiang, Zi-Xuan
He, Xiao
Liu, Yu
Shen, Hui
Tian, Qing
Pei, Yu-Fang
Deng, Hong-Wen
Zhang, Lei
author_facet Ran, Shu
Zhang, Yu-Xue
Liu, Lu
Jiang, Zi-Xuan
He, Xiao
Liu, Yu
Shen, Hui
Tian, Qing
Pei, Yu-Fang
Deng, Hong-Wen
Zhang, Lei
author_sort Ran, Shu
collection PubMed
description Whole body lean mass (WBLM) is a heritable trait predicting sarcopenia. To identify genomic locus underlying WBLM, we performed a genome-wide association study of fat-adjusted WBLM in the Framingham Heart Study (FHS, N = 6,004), and replicated in the Kansas City Osteoporosis Study (KCOS, N = 2,207). We identified a novel locus 3p27.1 that was associated with WBLM (lead SNP rs3732593 P = 7.19 × 10(−8)) in the discovery FHS sample, and the lead SNP was successfully replicated in the KCOS sample (one-sided P = 0.04). Bioinformatics analysis found that this SNP and its adjacent SNPs had the function of regulating enhancer activity in skeletal muscle myoblasts cells, further confirming the regulation of WBLM by this locus. Our finding provides new insight into the genetics of WBLM and enhance our understanding of sarcopenia.
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spelling pubmed-70629072020-03-18 Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study Ran, Shu Zhang, Yu-Xue Liu, Lu Jiang, Zi-Xuan He, Xiao Liu, Yu Shen, Hui Tian, Qing Pei, Yu-Fang Deng, Hong-Wen Zhang, Lei Sci Rep Article Whole body lean mass (WBLM) is a heritable trait predicting sarcopenia. To identify genomic locus underlying WBLM, we performed a genome-wide association study of fat-adjusted WBLM in the Framingham Heart Study (FHS, N = 6,004), and replicated in the Kansas City Osteoporosis Study (KCOS, N = 2,207). We identified a novel locus 3p27.1 that was associated with WBLM (lead SNP rs3732593 P = 7.19 × 10(−8)) in the discovery FHS sample, and the lead SNP was successfully replicated in the KCOS sample (one-sided P = 0.04). Bioinformatics analysis found that this SNP and its adjacent SNPs had the function of regulating enhancer activity in skeletal muscle myoblasts cells, further confirming the regulation of WBLM by this locus. Our finding provides new insight into the genetics of WBLM and enhance our understanding of sarcopenia. Nature Publishing Group UK 2020-03-09 /pmc/articles/PMC7062907/ /pubmed/32152362 http://dx.doi.org/10.1038/s41598-020-61272-z Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ran, Shu
Zhang, Yu-Xue
Liu, Lu
Jiang, Zi-Xuan
He, Xiao
Liu, Yu
Shen, Hui
Tian, Qing
Pei, Yu-Fang
Deng, Hong-Wen
Zhang, Lei
Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study
title Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study
title_full Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study
title_fullStr Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study
title_full_unstemmed Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study
title_short Association of 3p27.1 Variants with Whole Body Lean Mass Identified by a Genome-wide Association Study
title_sort association of 3p27.1 variants with whole body lean mass identified by a genome-wide association study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7062907/
https://www.ncbi.nlm.nih.gov/pubmed/32152362
http://dx.doi.org/10.1038/s41598-020-61272-z
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