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Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae
microRNAs (miRNAs) are an abundant class of non-coding RNA species with important regulatory roles in gene expression at the posttranscriptional level. The helminth Acanthocheilonema viteae serves as model organism for research on parasitic filarial nematodes. Total RNA secreted or excreted in vitro...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7063170/ https://www.ncbi.nlm.nih.gov/pubmed/32181299 http://dx.doi.org/10.1016/j.dib.2020.105334 |
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author | Soichot, Julien Endriss, Yvette Marti, Hanspeter Tritten, Lucienne |
author_facet | Soichot, Julien Endriss, Yvette Marti, Hanspeter Tritten, Lucienne |
author_sort | Soichot, Julien |
collection | PubMed |
description | microRNAs (miRNAs) are an abundant class of non-coding RNA species with important regulatory roles in gene expression at the posttranscriptional level. The helminth Acanthocheilonema viteae serves as model organism for research on parasitic filarial nematodes. Total RNA secreted or excreted in vitro by 1500 adult female and male A. viteae over 3 weeks was isolated from culture media previously processed by differential ultracentrifugation. miRNA sequencing revealed the presence of 360 unique miRNA candidates released by adult A. viteae in vitro. Among them, 74 high-confidence unique miRNAs, as well as several potential novel miRNA candidates were discovered. A large proportion of the sequenced miRNA candidates appeared differentially expressed between the male and female samples based on normalized copy count. The presence of extracellular vesicles, often rich in miRNAs, could not be confirmed unambiguously by transmission electron microscopy. |
format | Online Article Text |
id | pubmed-7063170 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-70631702020-03-16 Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae Soichot, Julien Endriss, Yvette Marti, Hanspeter Tritten, Lucienne Data Brief Immunology and Microbiology microRNAs (miRNAs) are an abundant class of non-coding RNA species with important regulatory roles in gene expression at the posttranscriptional level. The helminth Acanthocheilonema viteae serves as model organism for research on parasitic filarial nematodes. Total RNA secreted or excreted in vitro by 1500 adult female and male A. viteae over 3 weeks was isolated from culture media previously processed by differential ultracentrifugation. miRNA sequencing revealed the presence of 360 unique miRNA candidates released by adult A. viteae in vitro. Among them, 74 high-confidence unique miRNAs, as well as several potential novel miRNA candidates were discovered. A large proportion of the sequenced miRNA candidates appeared differentially expressed between the male and female samples based on normalized copy count. The presence of extracellular vesicles, often rich in miRNAs, could not be confirmed unambiguously by transmission electron microscopy. Elsevier 2020-02-25 /pmc/articles/PMC7063170/ /pubmed/32181299 http://dx.doi.org/10.1016/j.dib.2020.105334 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Immunology and Microbiology Soichot, Julien Endriss, Yvette Marti, Hanspeter Tritten, Lucienne Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae |
title | Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae |
title_full | Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae |
title_fullStr | Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae |
title_full_unstemmed | Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae |
title_short | Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae |
title_sort | secreted microrna data from the parasitic filarial nematode acanthocheilonema viteae |
topic | Immunology and Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7063170/ https://www.ncbi.nlm.nih.gov/pubmed/32181299 http://dx.doi.org/10.1016/j.dib.2020.105334 |
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