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Comparative Transcriptome Analysis Reveals Molecular Defensive Mechanism of Arachis hypogaea in Response to Salt Stress

Abiotic stresses comprise all nonliving factors, such as soil salinity, drought, extreme temperatures, and metal toxicity, posing a serious threat to agriculture and affecting the plant production around the world. Peanut (Arachis hypogaea L.) is one of the most important crops for vegetable oil, pr...

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Autores principales: Zhang, Hao, Zhao, Xiaobo, Sun, Quanxi, Yan, Caixia, Wang, Juan, Yuan, Cuiling, Li, Chunjuan, Shan, Shihua, Liu, Fengzhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7063224/
https://www.ncbi.nlm.nih.gov/pubmed/32190641
http://dx.doi.org/10.1155/2020/6524093
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author Zhang, Hao
Zhao, Xiaobo
Sun, Quanxi
Yan, Caixia
Wang, Juan
Yuan, Cuiling
Li, Chunjuan
Shan, Shihua
Liu, Fengzhen
author_facet Zhang, Hao
Zhao, Xiaobo
Sun, Quanxi
Yan, Caixia
Wang, Juan
Yuan, Cuiling
Li, Chunjuan
Shan, Shihua
Liu, Fengzhen
author_sort Zhang, Hao
collection PubMed
description Abiotic stresses comprise all nonliving factors, such as soil salinity, drought, extreme temperatures, and metal toxicity, posing a serious threat to agriculture and affecting the plant production around the world. Peanut (Arachis hypogaea L.) is one of the most important crops for vegetable oil, proteins, minerals, and vitamins in the world. Therefore, it is of importance to understand the molecular mechanism of peanut against salt stress. Six transcriptome sequencing libraries including 24-hour salt treatments and control samples were constructed from the young leaves of peanut. A comprehensive analysis between two groups detected 3,425 differentially expressed genes (DEGs) including 2,013 upregulated genes and 1,412 downregulated genes. Of these DEGs, 141 transcription factors (TFs) mainly consisting of MYB, AP2/ERF, WRKY, bHLH, and HSF were identified in response to salinity stress. Further, GO categories of the DEGs highly related to regulation of cell growth, cell periphery, sustained external encapsulating structure, cell wall organization or biogenesis, antioxidant activity, and peroxidase activity were significantly enriched for upregulated DEGs. The function of downregulated DEGs was mainly enriched in regulation of metabolic processes, oxidoreductase activity, and catalytic activity. Fourteen DEGs with response to salt tolerance were validated by real-time PCR. Taken together, the identification of DEGs' response to salt tolerance of cultivated peanut will provide a solid foundation for improving salt-tolerant peanut genetic manipulation in the future.
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spelling pubmed-70632242020-03-18 Comparative Transcriptome Analysis Reveals Molecular Defensive Mechanism of Arachis hypogaea in Response to Salt Stress Zhang, Hao Zhao, Xiaobo Sun, Quanxi Yan, Caixia Wang, Juan Yuan, Cuiling Li, Chunjuan Shan, Shihua Liu, Fengzhen Int J Genomics Research Article Abiotic stresses comprise all nonliving factors, such as soil salinity, drought, extreme temperatures, and metal toxicity, posing a serious threat to agriculture and affecting the plant production around the world. Peanut (Arachis hypogaea L.) is one of the most important crops for vegetable oil, proteins, minerals, and vitamins in the world. Therefore, it is of importance to understand the molecular mechanism of peanut against salt stress. Six transcriptome sequencing libraries including 24-hour salt treatments and control samples were constructed from the young leaves of peanut. A comprehensive analysis between two groups detected 3,425 differentially expressed genes (DEGs) including 2,013 upregulated genes and 1,412 downregulated genes. Of these DEGs, 141 transcription factors (TFs) mainly consisting of MYB, AP2/ERF, WRKY, bHLH, and HSF were identified in response to salinity stress. Further, GO categories of the DEGs highly related to regulation of cell growth, cell periphery, sustained external encapsulating structure, cell wall organization or biogenesis, antioxidant activity, and peroxidase activity were significantly enriched for upregulated DEGs. The function of downregulated DEGs was mainly enriched in regulation of metabolic processes, oxidoreductase activity, and catalytic activity. Fourteen DEGs with response to salt tolerance were validated by real-time PCR. Taken together, the identification of DEGs' response to salt tolerance of cultivated peanut will provide a solid foundation for improving salt-tolerant peanut genetic manipulation in the future. Hindawi 2020-02-26 /pmc/articles/PMC7063224/ /pubmed/32190641 http://dx.doi.org/10.1155/2020/6524093 Text en Copyright © 2020 Hao Zhang et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhang, Hao
Zhao, Xiaobo
Sun, Quanxi
Yan, Caixia
Wang, Juan
Yuan, Cuiling
Li, Chunjuan
Shan, Shihua
Liu, Fengzhen
Comparative Transcriptome Analysis Reveals Molecular Defensive Mechanism of Arachis hypogaea in Response to Salt Stress
title Comparative Transcriptome Analysis Reveals Molecular Defensive Mechanism of Arachis hypogaea in Response to Salt Stress
title_full Comparative Transcriptome Analysis Reveals Molecular Defensive Mechanism of Arachis hypogaea in Response to Salt Stress
title_fullStr Comparative Transcriptome Analysis Reveals Molecular Defensive Mechanism of Arachis hypogaea in Response to Salt Stress
title_full_unstemmed Comparative Transcriptome Analysis Reveals Molecular Defensive Mechanism of Arachis hypogaea in Response to Salt Stress
title_short Comparative Transcriptome Analysis Reveals Molecular Defensive Mechanism of Arachis hypogaea in Response to Salt Stress
title_sort comparative transcriptome analysis reveals molecular defensive mechanism of arachis hypogaea in response to salt stress
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7063224/
https://www.ncbi.nlm.nih.gov/pubmed/32190641
http://dx.doi.org/10.1155/2020/6524093
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