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Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs
1) To show how to exploit the information contained in the trajectories of time-varying patient clinical data for dynamic predictions of mortality in the ICU; and 2) to demonstrate the additional predictive value that can be achieved by incorporating this trajectory information. DESIGN: Observationa...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wolters Kluwer Health
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7063876/ https://www.ncbi.nlm.nih.gov/pubmed/32166256 http://dx.doi.org/10.1097/CCE.0000000000000010 |
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author | Ma, Junchao Lee, Donald K. K. Perkins, Michael E. Pisani, Margaret A. Pinker, Edieal |
author_facet | Ma, Junchao Lee, Donald K. K. Perkins, Michael E. Pisani, Margaret A. Pinker, Edieal |
author_sort | Ma, Junchao |
collection | PubMed |
description | 1) To show how to exploit the information contained in the trajectories of time-varying patient clinical data for dynamic predictions of mortality in the ICU; and 2) to demonstrate the additional predictive value that can be achieved by incorporating this trajectory information. DESIGN: Observational, retrospective study of patient medical records for training and testing of statistical learning models using different sets of predictor variables. SETTING: Medical ICU at the Yale-New Haven Hospital. SUBJECTS: Electronic health records of 3,763 patients admitted to the medical ICU between January 2013 and January 2015. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: Six-hour mortality predictions for ICU patients were generated and updated every 6 hours by applying the random forest classifier to patient time series data from the prior 24 hours. The time series were processed in different ways to create two main models: 1) manual extraction of the summary statistics used in the literature (min/max/median/first/last/number of measurements) and 2) automated extraction of trajectory features using machine learning. Out-of-sample area under the receiver operating characteristics curve and area under the precision-recall curve (“precision” refers to positive predictive value and “recall” to sensitivity) were used to evaluate the predictive performance of the two models. For 6-hour prediction and updating, the second model achieved area under the receiver operating characteristics curve and area under the precision-recall curve of 0.905 (95% CI, 0.900–0.910) and 0.381 (95% CI, 0.368–0.394), respectively, which are statistically significantly higher than those achieved by the first model, with area under the receiver operating characteristics curve and area under the precision-recall curve of 0.896 (95% CI, 0.892–0.900) and 0.905 (95% CI, 0.353–0.379). The superiority of the second model held true for 12-hour prediction/updating as well as for 24-hour prediction/updating. CONCLUSIONS: We show that statistical learning techniques can be used to automatically extract all relevant shape features for use in predictive modeling. The approach requires no additional data and can potentially be used to improve any risk model that uses some form of trajectory information. In this single-center study, the shapes of the clinical data trajectories convey information about ICU mortality risk beyond what is already captured by the summary statistics currently used in the literature. |
format | Online Article Text |
id | pubmed-7063876 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Wolters Kluwer Health |
record_format | MEDLINE/PubMed |
spelling | pubmed-70638762020-03-12 Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs Ma, Junchao Lee, Donald K. K. Perkins, Michael E. Pisani, Margaret A. Pinker, Edieal Crit Care Explor Methodology 1) To show how to exploit the information contained in the trajectories of time-varying patient clinical data for dynamic predictions of mortality in the ICU; and 2) to demonstrate the additional predictive value that can be achieved by incorporating this trajectory information. DESIGN: Observational, retrospective study of patient medical records for training and testing of statistical learning models using different sets of predictor variables. SETTING: Medical ICU at the Yale-New Haven Hospital. SUBJECTS: Electronic health records of 3,763 patients admitted to the medical ICU between January 2013 and January 2015. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: Six-hour mortality predictions for ICU patients were generated and updated every 6 hours by applying the random forest classifier to patient time series data from the prior 24 hours. The time series were processed in different ways to create two main models: 1) manual extraction of the summary statistics used in the literature (min/max/median/first/last/number of measurements) and 2) automated extraction of trajectory features using machine learning. Out-of-sample area under the receiver operating characteristics curve and area under the precision-recall curve (“precision” refers to positive predictive value and “recall” to sensitivity) were used to evaluate the predictive performance of the two models. For 6-hour prediction and updating, the second model achieved area under the receiver operating characteristics curve and area under the precision-recall curve of 0.905 (95% CI, 0.900–0.910) and 0.381 (95% CI, 0.368–0.394), respectively, which are statistically significantly higher than those achieved by the first model, with area under the receiver operating characteristics curve and area under the precision-recall curve of 0.896 (95% CI, 0.892–0.900) and 0.905 (95% CI, 0.353–0.379). The superiority of the second model held true for 12-hour prediction/updating as well as for 24-hour prediction/updating. CONCLUSIONS: We show that statistical learning techniques can be used to automatically extract all relevant shape features for use in predictive modeling. The approach requires no additional data and can potentially be used to improve any risk model that uses some form of trajectory information. In this single-center study, the shapes of the clinical data trajectories convey information about ICU mortality risk beyond what is already captured by the summary statistics currently used in the literature. Wolters Kluwer Health 2019-04-17 /pmc/articles/PMC7063876/ /pubmed/32166256 http://dx.doi.org/10.1097/CCE.0000000000000010 Text en Copyright (c) 2019 The Authors. Published by Wolters Kluwer Health, Inc. on behalf of the Society of Critical Care Medicine. This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND) (http://creativecommons.org/licenses/by-nc-nd/4.0/) , where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal. |
spellingShingle | Methodology Ma, Junchao Lee, Donald K. K. Perkins, Michael E. Pisani, Margaret A. Pinker, Edieal Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs |
title | Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs |
title_full | Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs |
title_fullStr | Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs |
title_full_unstemmed | Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs |
title_short | Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs |
title_sort | using the shapes of clinical data trajectories to predict mortality in icus |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7063876/ https://www.ncbi.nlm.nih.gov/pubmed/32166256 http://dx.doi.org/10.1097/CCE.0000000000000010 |
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