Cargando…

Tomographic reconstruction with a generative adversarial network

This paper presents a deep learning algorithm for tomographic reconstruction (GANrec). The algorithm uses a generative adversarial network (GAN) to solve the inverse of the Radon transform directly. It works for independent sinograms without additional training steps. The GAN has been developed to f...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Xiaogang, Kahnt, Maik, Brückner, Dennis, Schropp, Andreas, Fam, Yakub, Becher, Johannes, Grunwaldt, Jan-Dierk, Sheppard, Thomas L., Schroer, Christian G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064113/
https://www.ncbi.nlm.nih.gov/pubmed/32153289
http://dx.doi.org/10.1107/S1600577520000831
_version_ 1783504819170836480
author Yang, Xiaogang
Kahnt, Maik
Brückner, Dennis
Schropp, Andreas
Fam, Yakub
Becher, Johannes
Grunwaldt, Jan-Dierk
Sheppard, Thomas L.
Schroer, Christian G.
author_facet Yang, Xiaogang
Kahnt, Maik
Brückner, Dennis
Schropp, Andreas
Fam, Yakub
Becher, Johannes
Grunwaldt, Jan-Dierk
Sheppard, Thomas L.
Schroer, Christian G.
author_sort Yang, Xiaogang
collection PubMed
description This paper presents a deep learning algorithm for tomographic reconstruction (GANrec). The algorithm uses a generative adversarial network (GAN) to solve the inverse of the Radon transform directly. It works for independent sinograms without additional training steps. The GAN has been developed to fit the input sinogram with the model sinogram generated from the predicted reconstruction. Good quality reconstructions can be obtained during the minimization of the fitting errors. The reconstruction is a self-training procedure based on the physics model, instead of on training data. The algorithm showed significant improvements in the reconstruction accuracy, especially for missing-wedge tomography acquired at less than 180° rotational range. It was also validated by reconstructing a missing-wedge X-ray ptychographic tomography (PXCT) data set of a macroporous zeolite particle, for which only 51 projections over 70° could be collected. The GANrec recovered the 3D pore structure with reasonable quality for further analysis. This reconstruction concept can work universally for most of the ill-posed inverse problems if the forward model is well defined, such as phase retrieval of in-line phase-contrast imaging.
format Online
Article
Text
id pubmed-7064113
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-70641132020-03-13 Tomographic reconstruction with a generative adversarial network Yang, Xiaogang Kahnt, Maik Brückner, Dennis Schropp, Andreas Fam, Yakub Becher, Johannes Grunwaldt, Jan-Dierk Sheppard, Thomas L. Schroer, Christian G. J Synchrotron Radiat Research Papers This paper presents a deep learning algorithm for tomographic reconstruction (GANrec). The algorithm uses a generative adversarial network (GAN) to solve the inverse of the Radon transform directly. It works for independent sinograms without additional training steps. The GAN has been developed to fit the input sinogram with the model sinogram generated from the predicted reconstruction. Good quality reconstructions can be obtained during the minimization of the fitting errors. The reconstruction is a self-training procedure based on the physics model, instead of on training data. The algorithm showed significant improvements in the reconstruction accuracy, especially for missing-wedge tomography acquired at less than 180° rotational range. It was also validated by reconstructing a missing-wedge X-ray ptychographic tomography (PXCT) data set of a macroporous zeolite particle, for which only 51 projections over 70° could be collected. The GANrec recovered the 3D pore structure with reasonable quality for further analysis. This reconstruction concept can work universally for most of the ill-posed inverse problems if the forward model is well defined, such as phase retrieval of in-line phase-contrast imaging. International Union of Crystallography 2020-02-18 /pmc/articles/PMC7064113/ /pubmed/32153289 http://dx.doi.org/10.1107/S1600577520000831 Text en © Xiaogang Yang et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Papers
Yang, Xiaogang
Kahnt, Maik
Brückner, Dennis
Schropp, Andreas
Fam, Yakub
Becher, Johannes
Grunwaldt, Jan-Dierk
Sheppard, Thomas L.
Schroer, Christian G.
Tomographic reconstruction with a generative adversarial network
title Tomographic reconstruction with a generative adversarial network
title_full Tomographic reconstruction with a generative adversarial network
title_fullStr Tomographic reconstruction with a generative adversarial network
title_full_unstemmed Tomographic reconstruction with a generative adversarial network
title_short Tomographic reconstruction with a generative adversarial network
title_sort tomographic reconstruction with a generative adversarial network
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064113/
https://www.ncbi.nlm.nih.gov/pubmed/32153289
http://dx.doi.org/10.1107/S1600577520000831
work_keys_str_mv AT yangxiaogang tomographicreconstructionwithagenerativeadversarialnetwork
AT kahntmaik tomographicreconstructionwithagenerativeadversarialnetwork
AT brucknerdennis tomographicreconstructionwithagenerativeadversarialnetwork
AT schroppandreas tomographicreconstructionwithagenerativeadversarialnetwork
AT famyakub tomographicreconstructionwithagenerativeadversarialnetwork
AT becherjohannes tomographicreconstructionwithagenerativeadversarialnetwork
AT grunwaldtjandierk tomographicreconstructionwithagenerativeadversarialnetwork
AT sheppardthomasl tomographicreconstructionwithagenerativeadversarialnetwork
AT schroerchristiang tomographicreconstructionwithagenerativeadversarialnetwork