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Tomographic reconstruction with a generative adversarial network
This paper presents a deep learning algorithm for tomographic reconstruction (GANrec). The algorithm uses a generative adversarial network (GAN) to solve the inverse of the Radon transform directly. It works for independent sinograms without additional training steps. The GAN has been developed to f...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064113/ https://www.ncbi.nlm.nih.gov/pubmed/32153289 http://dx.doi.org/10.1107/S1600577520000831 |
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author | Yang, Xiaogang Kahnt, Maik Brückner, Dennis Schropp, Andreas Fam, Yakub Becher, Johannes Grunwaldt, Jan-Dierk Sheppard, Thomas L. Schroer, Christian G. |
author_facet | Yang, Xiaogang Kahnt, Maik Brückner, Dennis Schropp, Andreas Fam, Yakub Becher, Johannes Grunwaldt, Jan-Dierk Sheppard, Thomas L. Schroer, Christian G. |
author_sort | Yang, Xiaogang |
collection | PubMed |
description | This paper presents a deep learning algorithm for tomographic reconstruction (GANrec). The algorithm uses a generative adversarial network (GAN) to solve the inverse of the Radon transform directly. It works for independent sinograms without additional training steps. The GAN has been developed to fit the input sinogram with the model sinogram generated from the predicted reconstruction. Good quality reconstructions can be obtained during the minimization of the fitting errors. The reconstruction is a self-training procedure based on the physics model, instead of on training data. The algorithm showed significant improvements in the reconstruction accuracy, especially for missing-wedge tomography acquired at less than 180° rotational range. It was also validated by reconstructing a missing-wedge X-ray ptychographic tomography (PXCT) data set of a macroporous zeolite particle, for which only 51 projections over 70° could be collected. The GANrec recovered the 3D pore structure with reasonable quality for further analysis. This reconstruction concept can work universally for most of the ill-posed inverse problems if the forward model is well defined, such as phase retrieval of in-line phase-contrast imaging. |
format | Online Article Text |
id | pubmed-7064113 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-70641132020-03-13 Tomographic reconstruction with a generative adversarial network Yang, Xiaogang Kahnt, Maik Brückner, Dennis Schropp, Andreas Fam, Yakub Becher, Johannes Grunwaldt, Jan-Dierk Sheppard, Thomas L. Schroer, Christian G. J Synchrotron Radiat Research Papers This paper presents a deep learning algorithm for tomographic reconstruction (GANrec). The algorithm uses a generative adversarial network (GAN) to solve the inverse of the Radon transform directly. It works for independent sinograms without additional training steps. The GAN has been developed to fit the input sinogram with the model sinogram generated from the predicted reconstruction. Good quality reconstructions can be obtained during the minimization of the fitting errors. The reconstruction is a self-training procedure based on the physics model, instead of on training data. The algorithm showed significant improvements in the reconstruction accuracy, especially for missing-wedge tomography acquired at less than 180° rotational range. It was also validated by reconstructing a missing-wedge X-ray ptychographic tomography (PXCT) data set of a macroporous zeolite particle, for which only 51 projections over 70° could be collected. The GANrec recovered the 3D pore structure with reasonable quality for further analysis. This reconstruction concept can work universally for most of the ill-posed inverse problems if the forward model is well defined, such as phase retrieval of in-line phase-contrast imaging. International Union of Crystallography 2020-02-18 /pmc/articles/PMC7064113/ /pubmed/32153289 http://dx.doi.org/10.1107/S1600577520000831 Text en © Xiaogang Yang et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Yang, Xiaogang Kahnt, Maik Brückner, Dennis Schropp, Andreas Fam, Yakub Becher, Johannes Grunwaldt, Jan-Dierk Sheppard, Thomas L. Schroer, Christian G. Tomographic reconstruction with a generative adversarial network |
title | Tomographic reconstruction with a generative adversarial network |
title_full | Tomographic reconstruction with a generative adversarial network |
title_fullStr | Tomographic reconstruction with a generative adversarial network |
title_full_unstemmed | Tomographic reconstruction with a generative adversarial network |
title_short | Tomographic reconstruction with a generative adversarial network |
title_sort | tomographic reconstruction with a generative adversarial network |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064113/ https://www.ncbi.nlm.nih.gov/pubmed/32153289 http://dx.doi.org/10.1107/S1600577520000831 |
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