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Predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning
Assessing the viability of a blastosyst is still empirical and non-reproducible nowadays. We developed an algorithm based on artificial vision and machine learning (and other classifiers) that predicts pregnancy using the beta human chorionic gonadotropin (b-hCG) test from both the morphology of an...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064494/ https://www.ncbi.nlm.nih.gov/pubmed/32157183 http://dx.doi.org/10.1038/s41598-020-61357-9 |
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author | Chavez-Badiola, Alejandro Flores-Saiffe Farias, Adolfo Mendizabal-Ruiz, Gerardo Garcia-Sanchez, Rodolfo Drakeley, Andrew J. Garcia-Sandoval, Juan Paulo |
author_facet | Chavez-Badiola, Alejandro Flores-Saiffe Farias, Adolfo Mendizabal-Ruiz, Gerardo Garcia-Sanchez, Rodolfo Drakeley, Andrew J. Garcia-Sandoval, Juan Paulo |
author_sort | Chavez-Badiola, Alejandro |
collection | PubMed |
description | Assessing the viability of a blastosyst is still empirical and non-reproducible nowadays. We developed an algorithm based on artificial vision and machine learning (and other classifiers) that predicts pregnancy using the beta human chorionic gonadotropin (b-hCG) test from both the morphology of an embryo and the age of the patients. We employed two high-quality databases with known pregnancy outcomes (n = 221). We created a system consisting of different classifiers that is feed with novel morphometric features extracted from the digital micrographs, along with other non-morphometric data to predict pregnancy. It was evaluated using five different classifiers: probabilistic bayesian, Support Vector Machines (SVM), deep neural network, decision tree, and Random Forest (RF), using a k-fold cross validation to assess the model’s generalization capabilities. In the database A, the SVM classifier achieved an F1 score of 0.74, and AUC of 0.77. In the database B the RF classifier obtained a F1 score of 0.71, and AUC of 0.75. Our results suggest that the system is able to predict a positive pregnancy test from a single digital image, offering a novel approach with the advantages of using a small database, being highly adaptable to different laboratory settings, and easy integration into clinical practice. |
format | Online Article Text |
id | pubmed-7064494 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70644942020-03-18 Predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning Chavez-Badiola, Alejandro Flores-Saiffe Farias, Adolfo Mendizabal-Ruiz, Gerardo Garcia-Sanchez, Rodolfo Drakeley, Andrew J. Garcia-Sandoval, Juan Paulo Sci Rep Article Assessing the viability of a blastosyst is still empirical and non-reproducible nowadays. We developed an algorithm based on artificial vision and machine learning (and other classifiers) that predicts pregnancy using the beta human chorionic gonadotropin (b-hCG) test from both the morphology of an embryo and the age of the patients. We employed two high-quality databases with known pregnancy outcomes (n = 221). We created a system consisting of different classifiers that is feed with novel morphometric features extracted from the digital micrographs, along with other non-morphometric data to predict pregnancy. It was evaluated using five different classifiers: probabilistic bayesian, Support Vector Machines (SVM), deep neural network, decision tree, and Random Forest (RF), using a k-fold cross validation to assess the model’s generalization capabilities. In the database A, the SVM classifier achieved an F1 score of 0.74, and AUC of 0.77. In the database B the RF classifier obtained a F1 score of 0.71, and AUC of 0.75. Our results suggest that the system is able to predict a positive pregnancy test from a single digital image, offering a novel approach with the advantages of using a small database, being highly adaptable to different laboratory settings, and easy integration into clinical practice. Nature Publishing Group UK 2020-03-10 /pmc/articles/PMC7064494/ /pubmed/32157183 http://dx.doi.org/10.1038/s41598-020-61357-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Chavez-Badiola, Alejandro Flores-Saiffe Farias, Adolfo Mendizabal-Ruiz, Gerardo Garcia-Sanchez, Rodolfo Drakeley, Andrew J. Garcia-Sandoval, Juan Paulo Predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning |
title | Predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning |
title_full | Predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning |
title_fullStr | Predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning |
title_full_unstemmed | Predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning |
title_short | Predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning |
title_sort | predicting pregnancy test results after embryo transfer by image feature extraction and analysis using machine learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064494/ https://www.ncbi.nlm.nih.gov/pubmed/32157183 http://dx.doi.org/10.1038/s41598-020-61357-9 |
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