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Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use

Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To monitor international trade of shark fin products and protect the endangered species from further population decline, we present rapid, user-friend...

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Autores principales: But, Grace Wing-Chiu, Wu, Hoi-Yan, Shao, Kwang-Tsao, Shaw, Pang-Chui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064571/
https://www.ncbi.nlm.nih.gov/pubmed/32157111
http://dx.doi.org/10.1038/s41598-020-61150-8
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author But, Grace Wing-Chiu
Wu, Hoi-Yan
Shao, Kwang-Tsao
Shaw, Pang-Chui
author_facet But, Grace Wing-Chiu
Wu, Hoi-Yan
Shao, Kwang-Tsao
Shaw, Pang-Chui
author_sort But, Grace Wing-Chiu
collection PubMed
description Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To monitor international trade of shark fin products and protect the endangered species from further population decline, we present rapid, user-friendly and sensitive diagnostic loop-mediated isothermal amplification (LAMP) and effective polymerase chain reaction (PCR) assays for all twelve CITES-listed shark species. Species-specific LAMP and PCR primers were designed based on cytochrome oxidase I (COI) and NADH2 regions. Our LAMP and PCR assays have been tested on 291 samples from 93 shark and related species. Target shark species could be differentiated from non-target species within three hours from DNA extraction to LAMP assay. The LAMP assay reported here is a simple and robust solution for on-site detection of CITES-listed shark species with shark fin products.
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spelling pubmed-70645712020-03-18 Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use But, Grace Wing-Chiu Wu, Hoi-Yan Shao, Kwang-Tsao Shaw, Pang-Chui Sci Rep Article Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To monitor international trade of shark fin products and protect the endangered species from further population decline, we present rapid, user-friendly and sensitive diagnostic loop-mediated isothermal amplification (LAMP) and effective polymerase chain reaction (PCR) assays for all twelve CITES-listed shark species. Species-specific LAMP and PCR primers were designed based on cytochrome oxidase I (COI) and NADH2 regions. Our LAMP and PCR assays have been tested on 291 samples from 93 shark and related species. Target shark species could be differentiated from non-target species within three hours from DNA extraction to LAMP assay. The LAMP assay reported here is a simple and robust solution for on-site detection of CITES-listed shark species with shark fin products. Nature Publishing Group UK 2020-03-10 /pmc/articles/PMC7064571/ /pubmed/32157111 http://dx.doi.org/10.1038/s41598-020-61150-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
But, Grace Wing-Chiu
Wu, Hoi-Yan
Shao, Kwang-Tsao
Shaw, Pang-Chui
Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use
title Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use
title_full Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use
title_fullStr Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use
title_full_unstemmed Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use
title_short Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use
title_sort rapid detection of cites-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064571/
https://www.ncbi.nlm.nih.gov/pubmed/32157111
http://dx.doi.org/10.1038/s41598-020-61150-8
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