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Tensor regularized total variation for denoising of third harmonic generation images of brain tumors

Third harmonic generation (THG) microscopy shows great potential for instant pathology of brain tissue during surgery. However, the rich morphologies contained and the noise associated makes image restoration, necessary for quantification of the THG images, challenging. Anisotropic diffusion filteri...

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Detalles Bibliográficos
Autores principales: Zhang, Zhiqing, Groot, Marie L., de Munck, Jan C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: WILEY‐VCH Verlag GmbH & Co. KGaA 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7065612/
https://www.ncbi.nlm.nih.gov/pubmed/29959831
http://dx.doi.org/10.1002/jbio.201800129
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author Zhang, Zhiqing
Groot, Marie L.
de Munck, Jan C.
author_facet Zhang, Zhiqing
Groot, Marie L.
de Munck, Jan C.
author_sort Zhang, Zhiqing
collection PubMed
description Third harmonic generation (THG) microscopy shows great potential for instant pathology of brain tissue during surgery. However, the rich morphologies contained and the noise associated makes image restoration, necessary for quantification of the THG images, challenging. Anisotropic diffusion filtering (ADF) has been recently applied to restore THG images of normal brain, but ADF is hard‐to‐code, time‐consuming and only reconstructs salient edges. This work overcomes these drawbacks by expressing ADF as a tensor regularized total variation model, which uses the Huber penalty and the L(1) norm for tensor regularization and fidelity measurement, respectively. The diffusion tensor is constructed from the structure tensor of ADF yet the tensor decomposition is performed only in the non‐flat areas. The resulting model is solved by an efficient and easy‐to‐code primal‐dual algorithm. Tests on THG brain tumor images show that the proposed model has comparable denoising performance as ADF while it much better restores weak edges and it is up to 60% more time efficient. [Image: see text]
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spelling pubmed-70656122020-03-16 Tensor regularized total variation for denoising of third harmonic generation images of brain tumors Zhang, Zhiqing Groot, Marie L. de Munck, Jan C. J Biophotonics Editor's Choice Third harmonic generation (THG) microscopy shows great potential for instant pathology of brain tissue during surgery. However, the rich morphologies contained and the noise associated makes image restoration, necessary for quantification of the THG images, challenging. Anisotropic diffusion filtering (ADF) has been recently applied to restore THG images of normal brain, but ADF is hard‐to‐code, time‐consuming and only reconstructs salient edges. This work overcomes these drawbacks by expressing ADF as a tensor regularized total variation model, which uses the Huber penalty and the L(1) norm for tensor regularization and fidelity measurement, respectively. The diffusion tensor is constructed from the structure tensor of ADF yet the tensor decomposition is performed only in the non‐flat areas. The resulting model is solved by an efficient and easy‐to‐code primal‐dual algorithm. Tests on THG brain tumor images show that the proposed model has comparable denoising performance as ADF while it much better restores weak edges and it is up to 60% more time efficient. [Image: see text] WILEY‐VCH Verlag GmbH & Co. KGaA 2018-08-16 2019-01 /pmc/articles/PMC7065612/ /pubmed/29959831 http://dx.doi.org/10.1002/jbio.201800129 Text en © 2018 The Authors. Journal of Biophotonics published by WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Editor's Choice
Zhang, Zhiqing
Groot, Marie L.
de Munck, Jan C.
Tensor regularized total variation for denoising of third harmonic generation images of brain tumors
title Tensor regularized total variation for denoising of third harmonic generation images of brain tumors
title_full Tensor regularized total variation for denoising of third harmonic generation images of brain tumors
title_fullStr Tensor regularized total variation for denoising of third harmonic generation images of brain tumors
title_full_unstemmed Tensor regularized total variation for denoising of third harmonic generation images of brain tumors
title_short Tensor regularized total variation for denoising of third harmonic generation images of brain tumors
title_sort tensor regularized total variation for denoising of third harmonic generation images of brain tumors
topic Editor's Choice
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7065612/
https://www.ncbi.nlm.nih.gov/pubmed/29959831
http://dx.doi.org/10.1002/jbio.201800129
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