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MMHub, a database for the mulberry metabolome

Mulberry is an important economic crop plant and traditional medicine. It contains a huge array of bioactive metabolites such as flavonoids, amino acids, alkaloids and vitamins. Consequently, mulberry has received increasing attention in recent years. MMHub (version 1.0) is the first open public rep...

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Detalles Bibliográficos
Autores principales: Li, Dong, Ma, Bi, Xu, Xiaofei, Chen, Guo, Li, Tian, He, Ningjia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7065671/
https://www.ncbi.nlm.nih.gov/pubmed/32159764
http://dx.doi.org/10.1093/database/baaa011
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author Li, Dong
Ma, Bi
Xu, Xiaofei
Chen, Guo
Li, Tian
He, Ningjia
author_facet Li, Dong
Ma, Bi
Xu, Xiaofei
Chen, Guo
Li, Tian
He, Ningjia
author_sort Li, Dong
collection PubMed
description Mulberry is an important economic crop plant and traditional medicine. It contains a huge array of bioactive metabolites such as flavonoids, amino acids, alkaloids and vitamins. Consequently, mulberry has received increasing attention in recent years. MMHub (version 1.0) is the first open public repository of mass spectra of small chemical compounds (<1000 Da) in mulberry leaves. The database contains 936 electrospray ionization tandem mass spectrometry (ESI-MS(2)) data and lists the specific distribution of compounds in 91 mulberry resources with two biological duplicates. ESI-MS(2) data were obtained under non-standardized and independent experimental conditions. In total, 124 metabolites were identified or tentatively annotated and details of 90 metabolites with associated chemical structures have been deposited in the database. Supporting information such as PubChem compound information, molecular formula and metabolite classification are also provided in the MS(2) spectral tag library. The MMHub provides important and comprehensive metabolome data for scientists working with mulberry. This information will be useful for the screening of quality resources and specific metabolites of mulberry. Database URL: https://biodb.swu.edu.cn/mmdb/
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spelling pubmed-70656712020-03-13 MMHub, a database for the mulberry metabolome Li, Dong Ma, Bi Xu, Xiaofei Chen, Guo Li, Tian He, Ningjia Database (Oxford) Database Tool Mulberry is an important economic crop plant and traditional medicine. It contains a huge array of bioactive metabolites such as flavonoids, amino acids, alkaloids and vitamins. Consequently, mulberry has received increasing attention in recent years. MMHub (version 1.0) is the first open public repository of mass spectra of small chemical compounds (<1000 Da) in mulberry leaves. The database contains 936 electrospray ionization tandem mass spectrometry (ESI-MS(2)) data and lists the specific distribution of compounds in 91 mulberry resources with two biological duplicates. ESI-MS(2) data were obtained under non-standardized and independent experimental conditions. In total, 124 metabolites were identified or tentatively annotated and details of 90 metabolites with associated chemical structures have been deposited in the database. Supporting information such as PubChem compound information, molecular formula and metabolite classification are also provided in the MS(2) spectral tag library. The MMHub provides important and comprehensive metabolome data for scientists working with mulberry. This information will be useful for the screening of quality resources and specific metabolites of mulberry. Database URL: https://biodb.swu.edu.cn/mmdb/ Oxford University Press 2020-03-11 /pmc/articles/PMC7065671/ /pubmed/32159764 http://dx.doi.org/10.1093/database/baaa011 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Li, Dong
Ma, Bi
Xu, Xiaofei
Chen, Guo
Li, Tian
He, Ningjia
MMHub, a database for the mulberry metabolome
title MMHub, a database for the mulberry metabolome
title_full MMHub, a database for the mulberry metabolome
title_fullStr MMHub, a database for the mulberry metabolome
title_full_unstemmed MMHub, a database for the mulberry metabolome
title_short MMHub, a database for the mulberry metabolome
title_sort mmhub, a database for the mulberry metabolome
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7065671/
https://www.ncbi.nlm.nih.gov/pubmed/32159764
http://dx.doi.org/10.1093/database/baaa011
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