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A permutation test and spatial cross-validation approach to assess models of interspecific competition between trees
Measuring species-specific competitive interactions is key to understanding plant communities. Repeat censused large forest dynamics plots offer an ideal setting to measure these interactions by estimating the species-specific competitive effect on neighboring tree growth. Estimating these interacti...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7065802/ https://www.ncbi.nlm.nih.gov/pubmed/32160247 http://dx.doi.org/10.1371/journal.pone.0229930 |
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author | Allen, David Kim, Albert Y. |
author_facet | Allen, David Kim, Albert Y. |
author_sort | Allen, David |
collection | PubMed |
description | Measuring species-specific competitive interactions is key to understanding plant communities. Repeat censused large forest dynamics plots offer an ideal setting to measure these interactions by estimating the species-specific competitive effect on neighboring tree growth. Estimating these interaction values can be difficult, however, because the number of them grows with the square of the number of species. Furthermore, confidence in the estimates can be overestimated if any spatial structure of model errors is not considered. Here we measured these interactions in a forest dynamics plot in a transitional oak-hickory forest. We analytically fit Bayesian linear regression models of annual tree radial growth as a function of that tree’s species, its size, and its neighboring trees. We then compared these models to test whether the identity of a tree’s neighbors matters and if so at what level: based on trait grouping, based on phylogenetic family, or based on species. We used a spatial cross-validation scheme to better estimate model errors while avoiding potentially over-fitting our models. Since our model is analytically solvable we can rapidly evaluate it, which allows our proposed cross-validation scheme to be computationally feasible. We found that the identity of the focal and competitor trees mattered for competitive interactions, but surprisingly, identity mattered at the family rather than species-level. |
format | Online Article Text |
id | pubmed-7065802 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-70658022020-03-23 A permutation test and spatial cross-validation approach to assess models of interspecific competition between trees Allen, David Kim, Albert Y. PLoS One Research Article Measuring species-specific competitive interactions is key to understanding plant communities. Repeat censused large forest dynamics plots offer an ideal setting to measure these interactions by estimating the species-specific competitive effect on neighboring tree growth. Estimating these interaction values can be difficult, however, because the number of them grows with the square of the number of species. Furthermore, confidence in the estimates can be overestimated if any spatial structure of model errors is not considered. Here we measured these interactions in a forest dynamics plot in a transitional oak-hickory forest. We analytically fit Bayesian linear regression models of annual tree radial growth as a function of that tree’s species, its size, and its neighboring trees. We then compared these models to test whether the identity of a tree’s neighbors matters and if so at what level: based on trait grouping, based on phylogenetic family, or based on species. We used a spatial cross-validation scheme to better estimate model errors while avoiding potentially over-fitting our models. Since our model is analytically solvable we can rapidly evaluate it, which allows our proposed cross-validation scheme to be computationally feasible. We found that the identity of the focal and competitor trees mattered for competitive interactions, but surprisingly, identity mattered at the family rather than species-level. Public Library of Science 2020-03-11 /pmc/articles/PMC7065802/ /pubmed/32160247 http://dx.doi.org/10.1371/journal.pone.0229930 Text en © 2020 Allen, Kim http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Allen, David Kim, Albert Y. A permutation test and spatial cross-validation approach to assess models of interspecific competition between trees |
title | A permutation test and spatial cross-validation approach to assess models of interspecific competition between trees |
title_full | A permutation test and spatial cross-validation approach to assess models of interspecific competition between trees |
title_fullStr | A permutation test and spatial cross-validation approach to assess models of interspecific competition between trees |
title_full_unstemmed | A permutation test and spatial cross-validation approach to assess models of interspecific competition between trees |
title_short | A permutation test and spatial cross-validation approach to assess models of interspecific competition between trees |
title_sort | permutation test and spatial cross-validation approach to assess models of interspecific competition between trees |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7065802/ https://www.ncbi.nlm.nih.gov/pubmed/32160247 http://dx.doi.org/10.1371/journal.pone.0229930 |
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