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Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer
A major challenge in radiomics is assembling data from multiple centers. Sharing data between hospitals is restricted by legal and ethical regulations. Distributed learning is a technique, enabling training models on multicenter data without data leaving the hospitals (“privacy-preserving” distribut...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7066122/ https://www.ncbi.nlm.nih.gov/pubmed/32161279 http://dx.doi.org/10.1038/s41598-020-61297-4 |
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author | Bogowicz, Marta Jochems, Arthur Deist, Timo M. Tanadini-Lang, Stephanie Huang, Shao Hui Chan, Biu Waldron, John N. Bratman, Scott O’Sullivan, Brian Riesterer, Oliver Studer, Gabriela Unkelbach, Jan Barakat, Samir Brakenhoff, Ruud H. Nauta, Irene Gazzani, Silvia E. Calareso, Giuseppina Scheckenbach, Kathrin Hoebers, Frank Wesseling, Frederik W. R. Keek, Simon Sanduleanu, Sebastian Leijenaar, Ralph T. H. Vergeer, Marije R. Leemans, C. René Terhaard, Chris H. J. van den Brekel, Michiel W. M. Hamming-Vrieze, Olga van der Heijden, Martijn A. Elhalawani, Hesham M. Fuller, Clifton D. Guckenberger, Matthias Lambin, Philippe |
author_facet | Bogowicz, Marta Jochems, Arthur Deist, Timo M. Tanadini-Lang, Stephanie Huang, Shao Hui Chan, Biu Waldron, John N. Bratman, Scott O’Sullivan, Brian Riesterer, Oliver Studer, Gabriela Unkelbach, Jan Barakat, Samir Brakenhoff, Ruud H. Nauta, Irene Gazzani, Silvia E. Calareso, Giuseppina Scheckenbach, Kathrin Hoebers, Frank Wesseling, Frederik W. R. Keek, Simon Sanduleanu, Sebastian Leijenaar, Ralph T. H. Vergeer, Marije R. Leemans, C. René Terhaard, Chris H. J. van den Brekel, Michiel W. M. Hamming-Vrieze, Olga van der Heijden, Martijn A. Elhalawani, Hesham M. Fuller, Clifton D. Guckenberger, Matthias Lambin, Philippe |
author_sort | Bogowicz, Marta |
collection | PubMed |
description | A major challenge in radiomics is assembling data from multiple centers. Sharing data between hospitals is restricted by legal and ethical regulations. Distributed learning is a technique, enabling training models on multicenter data without data leaving the hospitals (“privacy-preserving” distributed learning). This study tested feasibility of distributed learning of radiomics data for prediction of two year overall survival and HPV status in head and neck cancer (HNC) patients. Pretreatment CT images were collected from 1174 HNC patients in 6 different cohorts. 981 radiomic features were extracted using Z-Rad software implementation. Hierarchical clustering was performed to preselect features. Classification was done using logistic regression. In the validation dataset, the receiver operating characteristics (ROC) were compared between the models trained in the centralized and distributed manner. No difference in ROC was observed with respect to feature selection. The logistic regression coefficients were identical between the methods (absolute difference <10(−7)). In comparison of the full workflow (feature selection and classification), no significant difference in ROC was found between centralized and distributed models for both studied endpoints (DeLong p > 0.05). In conclusion, both feature selection and classification are feasible in a distributed manner using radiomics data, which opens new possibility for training more reliable radiomics models. |
format | Online Article Text |
id | pubmed-7066122 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70661222020-03-19 Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer Bogowicz, Marta Jochems, Arthur Deist, Timo M. Tanadini-Lang, Stephanie Huang, Shao Hui Chan, Biu Waldron, John N. Bratman, Scott O’Sullivan, Brian Riesterer, Oliver Studer, Gabriela Unkelbach, Jan Barakat, Samir Brakenhoff, Ruud H. Nauta, Irene Gazzani, Silvia E. Calareso, Giuseppina Scheckenbach, Kathrin Hoebers, Frank Wesseling, Frederik W. R. Keek, Simon Sanduleanu, Sebastian Leijenaar, Ralph T. H. Vergeer, Marije R. Leemans, C. René Terhaard, Chris H. J. van den Brekel, Michiel W. M. Hamming-Vrieze, Olga van der Heijden, Martijn A. Elhalawani, Hesham M. Fuller, Clifton D. Guckenberger, Matthias Lambin, Philippe Sci Rep Article A major challenge in radiomics is assembling data from multiple centers. Sharing data between hospitals is restricted by legal and ethical regulations. Distributed learning is a technique, enabling training models on multicenter data without data leaving the hospitals (“privacy-preserving” distributed learning). This study tested feasibility of distributed learning of radiomics data for prediction of two year overall survival and HPV status in head and neck cancer (HNC) patients. Pretreatment CT images were collected from 1174 HNC patients in 6 different cohorts. 981 radiomic features were extracted using Z-Rad software implementation. Hierarchical clustering was performed to preselect features. Classification was done using logistic regression. In the validation dataset, the receiver operating characteristics (ROC) were compared between the models trained in the centralized and distributed manner. No difference in ROC was observed with respect to feature selection. The logistic regression coefficients were identical between the methods (absolute difference <10(−7)). In comparison of the full workflow (feature selection and classification), no significant difference in ROC was found between centralized and distributed models for both studied endpoints (DeLong p > 0.05). In conclusion, both feature selection and classification are feasible in a distributed manner using radiomics data, which opens new possibility for training more reliable radiomics models. Nature Publishing Group UK 2020-03-11 /pmc/articles/PMC7066122/ /pubmed/32161279 http://dx.doi.org/10.1038/s41598-020-61297-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Bogowicz, Marta Jochems, Arthur Deist, Timo M. Tanadini-Lang, Stephanie Huang, Shao Hui Chan, Biu Waldron, John N. Bratman, Scott O’Sullivan, Brian Riesterer, Oliver Studer, Gabriela Unkelbach, Jan Barakat, Samir Brakenhoff, Ruud H. Nauta, Irene Gazzani, Silvia E. Calareso, Giuseppina Scheckenbach, Kathrin Hoebers, Frank Wesseling, Frederik W. R. Keek, Simon Sanduleanu, Sebastian Leijenaar, Ralph T. H. Vergeer, Marije R. Leemans, C. René Terhaard, Chris H. J. van den Brekel, Michiel W. M. Hamming-Vrieze, Olga van der Heijden, Martijn A. Elhalawani, Hesham M. Fuller, Clifton D. Guckenberger, Matthias Lambin, Philippe Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer |
title | Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer |
title_full | Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer |
title_fullStr | Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer |
title_full_unstemmed | Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer |
title_short | Privacy-preserving distributed learning of radiomics to predict overall survival and HPV status in head and neck cancer |
title_sort | privacy-preserving distributed learning of radiomics to predict overall survival and hpv status in head and neck cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7066122/ https://www.ncbi.nlm.nih.gov/pubmed/32161279 http://dx.doi.org/10.1038/s41598-020-61297-4 |
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