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Evaluation of Prognosis in Nasopharyngeal Cancer Using Machine Learning

BACKGROUND AND AIM: Although the prognosis of nasopharyngeal cancer largely depends on a classification based on the tumor-lymph node metastasis staging system, patients at the same stage may have different clinical outcomes. This study aimed to evaluate the survival prognosis of nasopharyngeal canc...

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Autores principales: Akcay, Melek, Etiz, Durmus, Celik, Ozer, Ozen, Alaattin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7066591/
https://www.ncbi.nlm.nih.gov/pubmed/32138606
http://dx.doi.org/10.1177/1533033820909829
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author Akcay, Melek
Etiz, Durmus
Celik, Ozer
Ozen, Alaattin
author_facet Akcay, Melek
Etiz, Durmus
Celik, Ozer
Ozen, Alaattin
author_sort Akcay, Melek
collection PubMed
description BACKGROUND AND AIM: Although the prognosis of nasopharyngeal cancer largely depends on a classification based on the tumor-lymph node metastasis staging system, patients at the same stage may have different clinical outcomes. This study aimed to evaluate the survival prognosis of nasopharyngeal cancer using machine learning. SETTINGS AND DESIGN: Original, retrospective. MATERIALS AND METHODS: A total of 72 patients with a diagnosis of nasopharyngeal cancer who received radiotherapy ± chemotherapy were included in the study. The contribution of patient, tumor, and treatment characteristics to the survival prognosis was evaluated by machine learning using the following techniques: logistic regression, artificial neural network, XGBoost, support-vector clustering, random forest, and Gaussian Naive Bayes. RESULTS: In the analysis of the data set, correlation analysis, and binary logistic regression analyses were applied. Of the 18 independent variables, 10 were found to be effective in predicting nasopharyngeal cancer-related mortality: age, weight loss, initial neutrophil/lymphocyte ratio, initial lactate dehydrogenase, initial hemoglobin, radiotherapy duration, tumor diameter, number of concurrent chemotherapy cycles, and T and N stages. Gaussian Naive Bayes was determined as the best algorithm to evaluate the prognosis of machine learning techniques (accuracy rate: 88%, area under the curve score: 0.91, confidence interval: 0.68-1, sensitivity: 75%, specificity: 100%). CONCLUSION: Many factors affect prognosis in cancer, and machine learning algorithms can be used to determine which factors have a greater effect on survival prognosis, which then allows further research into these factors. In the current study, Gaussian Naive Bayes was identified as the best algorithm for the evaluation of prognosis of nasopharyngeal cancer.
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spelling pubmed-70665912020-03-20 Evaluation of Prognosis in Nasopharyngeal Cancer Using Machine Learning Akcay, Melek Etiz, Durmus Celik, Ozer Ozen, Alaattin Technol Cancer Res Treat Original Article BACKGROUND AND AIM: Although the prognosis of nasopharyngeal cancer largely depends on a classification based on the tumor-lymph node metastasis staging system, patients at the same stage may have different clinical outcomes. This study aimed to evaluate the survival prognosis of nasopharyngeal cancer using machine learning. SETTINGS AND DESIGN: Original, retrospective. MATERIALS AND METHODS: A total of 72 patients with a diagnosis of nasopharyngeal cancer who received radiotherapy ± chemotherapy were included in the study. The contribution of patient, tumor, and treatment characteristics to the survival prognosis was evaluated by machine learning using the following techniques: logistic regression, artificial neural network, XGBoost, support-vector clustering, random forest, and Gaussian Naive Bayes. RESULTS: In the analysis of the data set, correlation analysis, and binary logistic regression analyses were applied. Of the 18 independent variables, 10 were found to be effective in predicting nasopharyngeal cancer-related mortality: age, weight loss, initial neutrophil/lymphocyte ratio, initial lactate dehydrogenase, initial hemoglobin, radiotherapy duration, tumor diameter, number of concurrent chemotherapy cycles, and T and N stages. Gaussian Naive Bayes was determined as the best algorithm to evaluate the prognosis of machine learning techniques (accuracy rate: 88%, area under the curve score: 0.91, confidence interval: 0.68-1, sensitivity: 75%, specificity: 100%). CONCLUSION: Many factors affect prognosis in cancer, and machine learning algorithms can be used to determine which factors have a greater effect on survival prognosis, which then allows further research into these factors. In the current study, Gaussian Naive Bayes was identified as the best algorithm for the evaluation of prognosis of nasopharyngeal cancer. SAGE Publications 2020-03-06 /pmc/articles/PMC7066591/ /pubmed/32138606 http://dx.doi.org/10.1177/1533033820909829 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Article
Akcay, Melek
Etiz, Durmus
Celik, Ozer
Ozen, Alaattin
Evaluation of Prognosis in Nasopharyngeal Cancer Using Machine Learning
title Evaluation of Prognosis in Nasopharyngeal Cancer Using Machine Learning
title_full Evaluation of Prognosis in Nasopharyngeal Cancer Using Machine Learning
title_fullStr Evaluation of Prognosis in Nasopharyngeal Cancer Using Machine Learning
title_full_unstemmed Evaluation of Prognosis in Nasopharyngeal Cancer Using Machine Learning
title_short Evaluation of Prognosis in Nasopharyngeal Cancer Using Machine Learning
title_sort evaluation of prognosis in nasopharyngeal cancer using machine learning
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7066591/
https://www.ncbi.nlm.nih.gov/pubmed/32138606
http://dx.doi.org/10.1177/1533033820909829
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