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Multiple Free Energy Calculations from Single State Point Continuous Fractional Component Monte Carlo Simulation Using Umbrella Sampling
[Image: see text] We introduce an alternative method to perform free energy calculations for mixtures at multiple temperatures and pressures from a single simulation, by combining umbrella sampling and the continuous fractional component Monte Carlo method. One can perform a simulation of a mixture...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7066647/ https://www.ncbi.nlm.nih.gov/pubmed/31999461 http://dx.doi.org/10.1021/acs.jctc.9b01097 |
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author | Rahbari, Ahmadreza Hens, Remco Moultos, Othonas A. Dubbeldam, David Vlugt, Thijs J. H. |
author_facet | Rahbari, Ahmadreza Hens, Remco Moultos, Othonas A. Dubbeldam, David Vlugt, Thijs J. H. |
author_sort | Rahbari, Ahmadreza |
collection | PubMed |
description | [Image: see text] We introduce an alternative method to perform free energy calculations for mixtures at multiple temperatures and pressures from a single simulation, by combining umbrella sampling and the continuous fractional component Monte Carlo method. One can perform a simulation of a mixture at a certain pressure and temperature and accurately compute the chemical potential at other pressures and temperatures close to the simulation conditions. This method has the following advantages: (1) Accurate estimates of the chemical potential as a function of pressure and temperature are obtained from a single state simulation without additional postprocessing. This can potentially reduce the number of simulations of a system for free energy calculations for a specific temperature and/or pressure range. (2) Partial molar volumes and enthalpies are obtained directly from the estimated chemical potentials. We tested our method for a Lennard-Jones system, aqueous mixtures of methanol at T = 298 K and P = 1 bar, and a mixture of ammonia, nitrogen, and hydrogen at T = 573 K and P = 800 bar. For pure methanol (N = 410 molecules), we observed that the estimated chemical potentials from umbrella sampling are in excellent agreement with the reference values obtained from independent simulations, for ΔT = ±15 K and ΔP = 100 bar (with respect to the simulated system). For larger systems, this range becomes smaller because the relative fluctuations of energy and volume become smaller. Without sufficient overlap, the performance of the method will become poor especially for nonlinear variations of the chemical potential. |
format | Online Article Text |
id | pubmed-7066647 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-70666472020-03-13 Multiple Free Energy Calculations from Single State Point Continuous Fractional Component Monte Carlo Simulation Using Umbrella Sampling Rahbari, Ahmadreza Hens, Remco Moultos, Othonas A. Dubbeldam, David Vlugt, Thijs J. H. J Chem Theory Comput [Image: see text] We introduce an alternative method to perform free energy calculations for mixtures at multiple temperatures and pressures from a single simulation, by combining umbrella sampling and the continuous fractional component Monte Carlo method. One can perform a simulation of a mixture at a certain pressure and temperature and accurately compute the chemical potential at other pressures and temperatures close to the simulation conditions. This method has the following advantages: (1) Accurate estimates of the chemical potential as a function of pressure and temperature are obtained from a single state simulation without additional postprocessing. This can potentially reduce the number of simulations of a system for free energy calculations for a specific temperature and/or pressure range. (2) Partial molar volumes and enthalpies are obtained directly from the estimated chemical potentials. We tested our method for a Lennard-Jones system, aqueous mixtures of methanol at T = 298 K and P = 1 bar, and a mixture of ammonia, nitrogen, and hydrogen at T = 573 K and P = 800 bar. For pure methanol (N = 410 molecules), we observed that the estimated chemical potentials from umbrella sampling are in excellent agreement with the reference values obtained from independent simulations, for ΔT = ±15 K and ΔP = 100 bar (with respect to the simulated system). For larger systems, this range becomes smaller because the relative fluctuations of energy and volume become smaller. Without sufficient overlap, the performance of the method will become poor especially for nonlinear variations of the chemical potential. American Chemical Society 2020-01-30 2020-03-10 /pmc/articles/PMC7066647/ /pubmed/31999461 http://dx.doi.org/10.1021/acs.jctc.9b01097 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Rahbari, Ahmadreza Hens, Remco Moultos, Othonas A. Dubbeldam, David Vlugt, Thijs J. H. Multiple Free Energy Calculations from Single State Point Continuous Fractional Component Monte Carlo Simulation Using Umbrella Sampling |
title | Multiple Free Energy Calculations from Single State
Point Continuous Fractional Component Monte Carlo Simulation Using
Umbrella Sampling |
title_full | Multiple Free Energy Calculations from Single State
Point Continuous Fractional Component Monte Carlo Simulation Using
Umbrella Sampling |
title_fullStr | Multiple Free Energy Calculations from Single State
Point Continuous Fractional Component Monte Carlo Simulation Using
Umbrella Sampling |
title_full_unstemmed | Multiple Free Energy Calculations from Single State
Point Continuous Fractional Component Monte Carlo Simulation Using
Umbrella Sampling |
title_short | Multiple Free Energy Calculations from Single State
Point Continuous Fractional Component Monte Carlo Simulation Using
Umbrella Sampling |
title_sort | multiple free energy calculations from single state
point continuous fractional component monte carlo simulation using
umbrella sampling |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7066647/ https://www.ncbi.nlm.nih.gov/pubmed/31999461 http://dx.doi.org/10.1021/acs.jctc.9b01097 |
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