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Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma
In this study, The Cancer Genome Atlas and Genotype-Tissue Expression databases were used to identify potential biomarkers of soft tissue sarcoma (STS) and construct a prognostic model. The model was used to calculate risk scores based on the expression of five key genes, among which MYBL2 and FBN2...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7066896/ https://www.ncbi.nlm.nih.gov/pubmed/32084007 http://dx.doi.org/10.18632/aging.102847 |
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author | Gu, Hui-Yun Zhang, Chao Guo, Jia Yang, Min Zhong, Hou-Cheng Jin, Wei Liu, Yang Gao, Li-Ping Wei, Ren-Xiong |
author_facet | Gu, Hui-Yun Zhang, Chao Guo, Jia Yang, Min Zhong, Hou-Cheng Jin, Wei Liu, Yang Gao, Li-Ping Wei, Ren-Xiong |
author_sort | Gu, Hui-Yun |
collection | PubMed |
description | In this study, The Cancer Genome Atlas and Genotype-Tissue Expression databases were used to identify potential biomarkers of soft tissue sarcoma (STS) and construct a prognostic model. The model was used to calculate risk scores based on the expression of five key genes, among which MYBL2 and FBN2 were upregulated and TSPAN7, GCSH, and DDX39B were downregulated in STS patients. We also examined gene signatures associated with the key genes and evaluated the model’s clinical utility. The key genes were found to be involved in the cell cycle, DNA replication, and various cancer pathways, and gene alterations were associated with a poor prognosis. According to the prognostic model, risk scores negatively correlated with infiltration of six types of immune cells. Furthermore, age, margin status, presence of metastasis, and risk score were independent prognostic factors for STS patients. A nomogram that incorporated the risk score and other independent prognostic factors accurately predicted survival in STS patients. These findings may help to improve prognostic prediction and aid in the identification of effective treatments for STS patients. |
format | Online Article Text |
id | pubmed-7066896 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-70668962020-03-19 Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma Gu, Hui-Yun Zhang, Chao Guo, Jia Yang, Min Zhong, Hou-Cheng Jin, Wei Liu, Yang Gao, Li-Ping Wei, Ren-Xiong Aging (Albany NY) Research Paper In this study, The Cancer Genome Atlas and Genotype-Tissue Expression databases were used to identify potential biomarkers of soft tissue sarcoma (STS) and construct a prognostic model. The model was used to calculate risk scores based on the expression of five key genes, among which MYBL2 and FBN2 were upregulated and TSPAN7, GCSH, and DDX39B were downregulated in STS patients. We also examined gene signatures associated with the key genes and evaluated the model’s clinical utility. The key genes were found to be involved in the cell cycle, DNA replication, and various cancer pathways, and gene alterations were associated with a poor prognosis. According to the prognostic model, risk scores negatively correlated with infiltration of six types of immune cells. Furthermore, age, margin status, presence of metastasis, and risk score were independent prognostic factors for STS patients. A nomogram that incorporated the risk score and other independent prognostic factors accurately predicted survival in STS patients. These findings may help to improve prognostic prediction and aid in the identification of effective treatments for STS patients. Impact Journals 2020-02-21 /pmc/articles/PMC7066896/ /pubmed/32084007 http://dx.doi.org/10.18632/aging.102847 Text en Copyright © 2020 Gu et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Gu, Hui-Yun Zhang, Chao Guo, Jia Yang, Min Zhong, Hou-Cheng Jin, Wei Liu, Yang Gao, Li-Ping Wei, Ren-Xiong Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma |
title | Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma |
title_full | Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma |
title_fullStr | Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma |
title_full_unstemmed | Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma |
title_short | Risk score based on expression of five novel genes predicts survival in soft tissue sarcoma |
title_sort | risk score based on expression of five novel genes predicts survival in soft tissue sarcoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7066896/ https://www.ncbi.nlm.nih.gov/pubmed/32084007 http://dx.doi.org/10.18632/aging.102847 |
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