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Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy

PURPOSE: Early clinical recognition of sepsis can be challenging. With the advancement of machine learning, promising real-time models to predict sepsis have emerged. We assessed their performance by carrying out a systematic review and meta-analysis. METHODS: A systematic search was performed in Pu...

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Autores principales: Fleuren, Lucas M., Klausch, Thomas L. T., Zwager, Charlotte L., Schoonmade, Linda J., Guo, Tingjie, Roggeveen, Luca F., Swart, Eleonora L., Girbes, Armand R. J., Thoral, Patrick, Ercole, Ari, Hoogendoorn, Mark, Elbers, Paul W. G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7067741/
https://www.ncbi.nlm.nih.gov/pubmed/31965266
http://dx.doi.org/10.1007/s00134-019-05872-y
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author Fleuren, Lucas M.
Klausch, Thomas L. T.
Zwager, Charlotte L.
Schoonmade, Linda J.
Guo, Tingjie
Roggeveen, Luca F.
Swart, Eleonora L.
Girbes, Armand R. J.
Thoral, Patrick
Ercole, Ari
Hoogendoorn, Mark
Elbers, Paul W. G.
author_facet Fleuren, Lucas M.
Klausch, Thomas L. T.
Zwager, Charlotte L.
Schoonmade, Linda J.
Guo, Tingjie
Roggeveen, Luca F.
Swart, Eleonora L.
Girbes, Armand R. J.
Thoral, Patrick
Ercole, Ari
Hoogendoorn, Mark
Elbers, Paul W. G.
author_sort Fleuren, Lucas M.
collection PubMed
description PURPOSE: Early clinical recognition of sepsis can be challenging. With the advancement of machine learning, promising real-time models to predict sepsis have emerged. We assessed their performance by carrying out a systematic review and meta-analysis. METHODS: A systematic search was performed in PubMed, Embase.com and Scopus. Studies targeting sepsis, severe sepsis or septic shock in any hospital setting were eligible for inclusion. The index test was any supervised machine learning model for real-time prediction of these conditions. Quality of evidence was assessed using the Grading of Recommendations Assessment, Development and Evaluation (GRADE) methodology, with a tailored Quality Assessment of Diagnostic Accuracy Studies (QUADAS-2) checklist to evaluate risk of bias. Models with a reported area under the curve of the receiver operating characteristic (AUROC) metric were meta-analyzed to identify strongest contributors to model performance. RESULTS: After screening, a total of 28 papers were eligible for synthesis, from which 130 models were extracted. The majority of papers were developed in the intensive care unit (ICU, n = 15; 54%), followed by hospital wards (n = 7; 25%), the emergency department (ED, n = 4; 14%) and all of these settings (n = 2; 7%). For the prediction of sepsis, diagnostic test accuracy assessed by the AUROC ranged from 0.68–0.99 in the ICU, to 0.96–0.98 in-hospital and 0.87 to 0.97 in the ED. Varying sepsis definitions limit pooling of the performance across studies. Only three papers clinically implemented models with mixed results. In the multivariate analysis, temperature, lab values, and model type contributed most to model performance. CONCLUSION: This systematic review and meta-analysis show that on retrospective data, individual machine learning models can accurately predict sepsis onset ahead of time. Although they present alternatives to traditional scoring systems, between-study heterogeneity limits the assessment of pooled results. Systematic reporting and clinical implementation studies are needed to bridge the gap between bytes and bedside. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00134-019-05872-y) contains supplementary material, which is available to authorized users.
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spelling pubmed-70677412020-03-23 Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy Fleuren, Lucas M. Klausch, Thomas L. T. Zwager, Charlotte L. Schoonmade, Linda J. Guo, Tingjie Roggeveen, Luca F. Swart, Eleonora L. Girbes, Armand R. J. Thoral, Patrick Ercole, Ari Hoogendoorn, Mark Elbers, Paul W. G. Intensive Care Med Systematic Review PURPOSE: Early clinical recognition of sepsis can be challenging. With the advancement of machine learning, promising real-time models to predict sepsis have emerged. We assessed their performance by carrying out a systematic review and meta-analysis. METHODS: A systematic search was performed in PubMed, Embase.com and Scopus. Studies targeting sepsis, severe sepsis or septic shock in any hospital setting were eligible for inclusion. The index test was any supervised machine learning model for real-time prediction of these conditions. Quality of evidence was assessed using the Grading of Recommendations Assessment, Development and Evaluation (GRADE) methodology, with a tailored Quality Assessment of Diagnostic Accuracy Studies (QUADAS-2) checklist to evaluate risk of bias. Models with a reported area under the curve of the receiver operating characteristic (AUROC) metric were meta-analyzed to identify strongest contributors to model performance. RESULTS: After screening, a total of 28 papers were eligible for synthesis, from which 130 models were extracted. The majority of papers were developed in the intensive care unit (ICU, n = 15; 54%), followed by hospital wards (n = 7; 25%), the emergency department (ED, n = 4; 14%) and all of these settings (n = 2; 7%). For the prediction of sepsis, diagnostic test accuracy assessed by the AUROC ranged from 0.68–0.99 in the ICU, to 0.96–0.98 in-hospital and 0.87 to 0.97 in the ED. Varying sepsis definitions limit pooling of the performance across studies. Only three papers clinically implemented models with mixed results. In the multivariate analysis, temperature, lab values, and model type contributed most to model performance. CONCLUSION: This systematic review and meta-analysis show that on retrospective data, individual machine learning models can accurately predict sepsis onset ahead of time. Although they present alternatives to traditional scoring systems, between-study heterogeneity limits the assessment of pooled results. Systematic reporting and clinical implementation studies are needed to bridge the gap between bytes and bedside. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00134-019-05872-y) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2020-01-21 2020 /pmc/articles/PMC7067741/ /pubmed/31965266 http://dx.doi.org/10.1007/s00134-019-05872-y Text en © The Author(s) 2020 Open AccessThis article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International License (http://creativecommons.org/licenses/by-nc/4.0/), which permits any noncommercial use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Systematic Review
Fleuren, Lucas M.
Klausch, Thomas L. T.
Zwager, Charlotte L.
Schoonmade, Linda J.
Guo, Tingjie
Roggeveen, Luca F.
Swart, Eleonora L.
Girbes, Armand R. J.
Thoral, Patrick
Ercole, Ari
Hoogendoorn, Mark
Elbers, Paul W. G.
Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy
title Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy
title_full Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy
title_fullStr Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy
title_full_unstemmed Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy
title_short Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy
title_sort machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy
topic Systematic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7067741/
https://www.ncbi.nlm.nih.gov/pubmed/31965266
http://dx.doi.org/10.1007/s00134-019-05872-y
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