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OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma

Esophageal Adenocarcinoma (EAC) is one of the most common gastrointestinal tumors in the world. However, molecular prognostic systems are still lacking for EAC. Hence, we developed an Online consensus Survival analysis web server for Esophageal Adenocarcinoma (OSeac), to centralize published gene ex...

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Autores principales: Wang, Qiang, Yan, Zhongyi, Ge, Linna, Li, Ning, Yang, Mengsi, Sun, Xiaoxiao, Xie, Longxiang, Zhang, Guosen, Zhu, Wan, Wang, Yunlong, Li, Yongqiang, Li, Xianzhe, Guo, Xiangqian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7067743/
https://www.ncbi.nlm.nih.gov/pubmed/32211334
http://dx.doi.org/10.3389/fonc.2020.00315
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author Wang, Qiang
Yan, Zhongyi
Ge, Linna
Li, Ning
Yang, Mengsi
Sun, Xiaoxiao
Xie, Longxiang
Zhang, Guosen
Zhu, Wan
Wang, Yunlong
Li, Yongqiang
Li, Xianzhe
Guo, Xiangqian
author_facet Wang, Qiang
Yan, Zhongyi
Ge, Linna
Li, Ning
Yang, Mengsi
Sun, Xiaoxiao
Xie, Longxiang
Zhang, Guosen
Zhu, Wan
Wang, Yunlong
Li, Yongqiang
Li, Xianzhe
Guo, Xiangqian
author_sort Wang, Qiang
collection PubMed
description Esophageal Adenocarcinoma (EAC) is one of the most common gastrointestinal tumors in the world. However, molecular prognostic systems are still lacking for EAC. Hence, we developed an Online consensus Survival analysis web server for Esophageal Adenocarcinoma (OSeac), to centralize published gene expression data and clinical follow up data of EAC patients from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO). OSeac includes 198 EAC cases with gene expression profiling and relevant clinical long-term follow-up data, and employs the Kaplan Meier (KM) survival plot with hazard ratio (HR) and log rank test to estimate the prognostic potency of genes of interests for EAC patients. Moreover, we have determined the reliability of OSeac by using previously reported prognostic biomarkers such as DKK3, CTO1, and TXNIP. OSeac is free and publicly accessible at http://bioinfo.henu.edu.cn/EAC/EACList.jsp.
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spelling pubmed-70677432020-03-24 OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma Wang, Qiang Yan, Zhongyi Ge, Linna Li, Ning Yang, Mengsi Sun, Xiaoxiao Xie, Longxiang Zhang, Guosen Zhu, Wan Wang, Yunlong Li, Yongqiang Li, Xianzhe Guo, Xiangqian Front Oncol Oncology Esophageal Adenocarcinoma (EAC) is one of the most common gastrointestinal tumors in the world. However, molecular prognostic systems are still lacking for EAC. Hence, we developed an Online consensus Survival analysis web server for Esophageal Adenocarcinoma (OSeac), to centralize published gene expression data and clinical follow up data of EAC patients from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO). OSeac includes 198 EAC cases with gene expression profiling and relevant clinical long-term follow-up data, and employs the Kaplan Meier (KM) survival plot with hazard ratio (HR) and log rank test to estimate the prognostic potency of genes of interests for EAC patients. Moreover, we have determined the reliability of OSeac by using previously reported prognostic biomarkers such as DKK3, CTO1, and TXNIP. OSeac is free and publicly accessible at http://bioinfo.henu.edu.cn/EAC/EACList.jsp. Frontiers Media S.A. 2020-03-06 /pmc/articles/PMC7067743/ /pubmed/32211334 http://dx.doi.org/10.3389/fonc.2020.00315 Text en Copyright © 2020 Wang, Yan, Ge, Li, Yang, Sun, Xie, Zhang, Zhu, Wang, Li, Li and Guo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Wang, Qiang
Yan, Zhongyi
Ge, Linna
Li, Ning
Yang, Mengsi
Sun, Xiaoxiao
Xie, Longxiang
Zhang, Guosen
Zhu, Wan
Wang, Yunlong
Li, Yongqiang
Li, Xianzhe
Guo, Xiangqian
OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma
title OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma
title_full OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma
title_fullStr OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma
title_full_unstemmed OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma
title_short OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma
title_sort oseac: an online survival analysis tool for esophageal adenocarcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7067743/
https://www.ncbi.nlm.nih.gov/pubmed/32211334
http://dx.doi.org/10.3389/fonc.2020.00315
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