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Visually guided classification trees for analyzing chronic patients
BACKGROUND: Chronic diseases are becoming more widespread each year in developed countries, mainly due to increasing life expectancy. Among them, diabetes mellitus (DM) and essential hypertension (EH) are two of the most prevalent ones. Furthermore, they can be the onset of other chronic conditions...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7069159/ https://www.ncbi.nlm.nih.gov/pubmed/32164533 http://dx.doi.org/10.1186/s12859-020-3359-3 |
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author | Soguero-Ruiz, Cristina Mora-Jiménez, Inmaculada Mohedano-Munoz, Miguel A. Rubio-Sanchez, Manuel Miguel-Bohoyo, Pablo de Sanchez, Alberto |
author_facet | Soguero-Ruiz, Cristina Mora-Jiménez, Inmaculada Mohedano-Munoz, Miguel A. Rubio-Sanchez, Manuel Miguel-Bohoyo, Pablo de Sanchez, Alberto |
author_sort | Soguero-Ruiz, Cristina |
collection | PubMed |
description | BACKGROUND: Chronic diseases are becoming more widespread each year in developed countries, mainly due to increasing life expectancy. Among them, diabetes mellitus (DM) and essential hypertension (EH) are two of the most prevalent ones. Furthermore, they can be the onset of other chronic conditions such as kidney or obstructive pulmonary diseases. The need to comprehend the factors related to such complex diseases motivates the development of interpretative and visual analysis methods, such as classification trees, which not only provide predictive models for diagnosing patients, but can also help to discover new clinical insights. RESULTS: In this paper, we analyzed healthy and chronic (diabetic, hypertensive) patients associated with the University Hospital of Fuenlabrada in Spain. Each patient was classified into a single health status according to clinical risk groups (CRGs). The CRGs characterize a patient through features such as age, gender, diagnosis codes, and drug codes. Based on these features and the CRGs, we have designed classification trees to determine the most discriminative decision features among different health statuses. In particular, we propose to make use of statistical data visualizations to guide the selection of features in each node when constructing a tree. We created several classification trees to distinguish among patients with different health statuses. We analyzed their performance in terms of classification accuracy, and drew clinical conclusions regarding the decision features considered in each tree. As expected, healthy patients and patients with a single chronic condition were better classified than patients with comorbidities. The constructed classification trees also show that the use of antipsychotics and the diagnosis of chronic airway obstruction are relevant for classifying patients with more than one chronic condition, in conjunction with the usual DM and/or EH diagnoses. CONCLUSIONS: We propose a methodology for constructing classification trees in a visually guided manner. The approach allows clinicians to progressively select the decision features at each of the tree nodes. The process is guided by exploratory data analysis visualizations, which may provide new insights and unexpected clinical information. |
format | Online Article Text |
id | pubmed-7069159 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-70691592020-03-18 Visually guided classification trees for analyzing chronic patients Soguero-Ruiz, Cristina Mora-Jiménez, Inmaculada Mohedano-Munoz, Miguel A. Rubio-Sanchez, Manuel Miguel-Bohoyo, Pablo de Sanchez, Alberto BMC Bioinformatics Research BACKGROUND: Chronic diseases are becoming more widespread each year in developed countries, mainly due to increasing life expectancy. Among them, diabetes mellitus (DM) and essential hypertension (EH) are two of the most prevalent ones. Furthermore, they can be the onset of other chronic conditions such as kidney or obstructive pulmonary diseases. The need to comprehend the factors related to such complex diseases motivates the development of interpretative and visual analysis methods, such as classification trees, which not only provide predictive models for diagnosing patients, but can also help to discover new clinical insights. RESULTS: In this paper, we analyzed healthy and chronic (diabetic, hypertensive) patients associated with the University Hospital of Fuenlabrada in Spain. Each patient was classified into a single health status according to clinical risk groups (CRGs). The CRGs characterize a patient through features such as age, gender, diagnosis codes, and drug codes. Based on these features and the CRGs, we have designed classification trees to determine the most discriminative decision features among different health statuses. In particular, we propose to make use of statistical data visualizations to guide the selection of features in each node when constructing a tree. We created several classification trees to distinguish among patients with different health statuses. We analyzed their performance in terms of classification accuracy, and drew clinical conclusions regarding the decision features considered in each tree. As expected, healthy patients and patients with a single chronic condition were better classified than patients with comorbidities. The constructed classification trees also show that the use of antipsychotics and the diagnosis of chronic airway obstruction are relevant for classifying patients with more than one chronic condition, in conjunction with the usual DM and/or EH diagnoses. CONCLUSIONS: We propose a methodology for constructing classification trees in a visually guided manner. The approach allows clinicians to progressively select the decision features at each of the tree nodes. The process is guided by exploratory data analysis visualizations, which may provide new insights and unexpected clinical information. BioMed Central 2020-03-11 /pmc/articles/PMC7069159/ /pubmed/32164533 http://dx.doi.org/10.1186/s12859-020-3359-3 Text en © The Author(s) 2020 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Soguero-Ruiz, Cristina Mora-Jiménez, Inmaculada Mohedano-Munoz, Miguel A. Rubio-Sanchez, Manuel Miguel-Bohoyo, Pablo de Sanchez, Alberto Visually guided classification trees for analyzing chronic patients |
title | Visually guided classification trees for analyzing chronic patients |
title_full | Visually guided classification trees for analyzing chronic patients |
title_fullStr | Visually guided classification trees for analyzing chronic patients |
title_full_unstemmed | Visually guided classification trees for analyzing chronic patients |
title_short | Visually guided classification trees for analyzing chronic patients |
title_sort | visually guided classification trees for analyzing chronic patients |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7069159/ https://www.ncbi.nlm.nih.gov/pubmed/32164533 http://dx.doi.org/10.1186/s12859-020-3359-3 |
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