Cargando…

Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective

In biotechnology, the emergence of high-throughput technologies challenges the interpretation of large datasets. One way to identify meaningful outcomes impacting process and product attributes from large datasets is using systems biology tools such as metabolic models. However, these tools are stil...

Descripción completa

Detalles Bibliográficos
Autores principales: Richelle, Anne, David, Blandine, Demaegd, Didier, Dewerchin, Marianne, Kinet, Romain, Morreale, Angelo, Portela, Rui, Zune, Quentin, von Stosch, Moritz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7070029/
https://www.ncbi.nlm.nih.gov/pubmed/32170148
http://dx.doi.org/10.1038/s41540-020-0127-y
_version_ 1783505892205920256
author Richelle, Anne
David, Blandine
Demaegd, Didier
Dewerchin, Marianne
Kinet, Romain
Morreale, Angelo
Portela, Rui
Zune, Quentin
von Stosch, Moritz
author_facet Richelle, Anne
David, Blandine
Demaegd, Didier
Dewerchin, Marianne
Kinet, Romain
Morreale, Angelo
Portela, Rui
Zune, Quentin
von Stosch, Moritz
author_sort Richelle, Anne
collection PubMed
description In biotechnology, the emergence of high-throughput technologies challenges the interpretation of large datasets. One way to identify meaningful outcomes impacting process and product attributes from large datasets is using systems biology tools such as metabolic models. However, these tools are still not fully exploited for this purpose in industrial context due to gaps in our knowledge and technical limitations. In this paper, key aspects restraining the routine implementation of these tools are highlighted in three research fields: monitoring, network science and hybrid modeling. Advances in these fields could expand the current state of systems biology applications in biopharmaceutical industry to address existing challenges in bioprocess development and improvement.
format Online
Article
Text
id pubmed-7070029
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-70700292020-03-19 Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective Richelle, Anne David, Blandine Demaegd, Didier Dewerchin, Marianne Kinet, Romain Morreale, Angelo Portela, Rui Zune, Quentin von Stosch, Moritz NPJ Syst Biol Appl Perspective In biotechnology, the emergence of high-throughput technologies challenges the interpretation of large datasets. One way to identify meaningful outcomes impacting process and product attributes from large datasets is using systems biology tools such as metabolic models. However, these tools are still not fully exploited for this purpose in industrial context due to gaps in our knowledge and technical limitations. In this paper, key aspects restraining the routine implementation of these tools are highlighted in three research fields: monitoring, network science and hybrid modeling. Advances in these fields could expand the current state of systems biology applications in biopharmaceutical industry to address existing challenges in bioprocess development and improvement. Nature Publishing Group UK 2020-03-13 /pmc/articles/PMC7070029/ /pubmed/32170148 http://dx.doi.org/10.1038/s41540-020-0127-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Perspective
Richelle, Anne
David, Blandine
Demaegd, Didier
Dewerchin, Marianne
Kinet, Romain
Morreale, Angelo
Portela, Rui
Zune, Quentin
von Stosch, Moritz
Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective
title Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective
title_full Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective
title_fullStr Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective
title_full_unstemmed Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective
title_short Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective
title_sort towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective
topic Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7070029/
https://www.ncbi.nlm.nih.gov/pubmed/32170148
http://dx.doi.org/10.1038/s41540-020-0127-y
work_keys_str_mv AT richelleanne towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective
AT davidblandine towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective
AT demaegddidier towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective
AT dewerchinmarianne towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective
AT kinetromain towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective
AT morrealeangelo towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective
AT portelarui towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective
AT zunequentin towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective
AT vonstoschmoritz towardsawidespreadadoptionofmetabolicmodelingtoolsinbiopharmaceuticalindustryaprocesssystemsbiologyengineeringperspective