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Detecting Respiratory Pathologies Using Convolutional Neural Networks and Variational Autoencoders for Unbalancing Data

The aim of this paper was the detection of pathologies through respiratory sounds. The ICBHI (International Conference on Biomedical and Health Informatics) Benchmark was used. This dataset is composed of 920 sounds of which 810 are of chronic diseases, 75 of non-chronic diseases and only 35 of heal...

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Autores principales: García-Ordás, María Teresa, Benítez-Andrades, José Alberto, García-Rodríguez, Isaías, Benavides, Carmen, Alaiz-Moretón, Héctor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7070339/
https://www.ncbi.nlm.nih.gov/pubmed/32098446
http://dx.doi.org/10.3390/s20041214
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author García-Ordás, María Teresa
Benítez-Andrades, José Alberto
García-Rodríguez, Isaías
Benavides, Carmen
Alaiz-Moretón, Héctor
author_facet García-Ordás, María Teresa
Benítez-Andrades, José Alberto
García-Rodríguez, Isaías
Benavides, Carmen
Alaiz-Moretón, Héctor
author_sort García-Ordás, María Teresa
collection PubMed
description The aim of this paper was the detection of pathologies through respiratory sounds. The ICBHI (International Conference on Biomedical and Health Informatics) Benchmark was used. This dataset is composed of 920 sounds of which 810 are of chronic diseases, 75 of non-chronic diseases and only 35 of healthy individuals. As more than 88% of the samples of the dataset are from the same class (Chronic), the use of a Variational Convolutional Autoencoder was proposed to generate new labeled data and other well known oversampling techniques after determining that the dataset classes are unbalanced. Once the preprocessing step was carried out, a Convolutional Neural Network (CNN) was used to classify the respiratory sounds into healthy, chronic, and non-chronic disease. In addition, we carried out a more challenging classification trying to distinguish between the different types of pathologies or healthy: URTI, COPD, Bronchiectasis, Pneumonia, and Bronchiolitis. We achieved results up to 0.993 F-Score in the three-label classification and 0.990 F-Score in the more challenging six-class classification.
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spelling pubmed-70703392020-03-19 Detecting Respiratory Pathologies Using Convolutional Neural Networks and Variational Autoencoders for Unbalancing Data García-Ordás, María Teresa Benítez-Andrades, José Alberto García-Rodríguez, Isaías Benavides, Carmen Alaiz-Moretón, Héctor Sensors (Basel) Article The aim of this paper was the detection of pathologies through respiratory sounds. The ICBHI (International Conference on Biomedical and Health Informatics) Benchmark was used. This dataset is composed of 920 sounds of which 810 are of chronic diseases, 75 of non-chronic diseases and only 35 of healthy individuals. As more than 88% of the samples of the dataset are from the same class (Chronic), the use of a Variational Convolutional Autoencoder was proposed to generate new labeled data and other well known oversampling techniques after determining that the dataset classes are unbalanced. Once the preprocessing step was carried out, a Convolutional Neural Network (CNN) was used to classify the respiratory sounds into healthy, chronic, and non-chronic disease. In addition, we carried out a more challenging classification trying to distinguish between the different types of pathologies or healthy: URTI, COPD, Bronchiectasis, Pneumonia, and Bronchiolitis. We achieved results up to 0.993 F-Score in the three-label classification and 0.990 F-Score in the more challenging six-class classification. MDPI 2020-02-22 /pmc/articles/PMC7070339/ /pubmed/32098446 http://dx.doi.org/10.3390/s20041214 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
García-Ordás, María Teresa
Benítez-Andrades, José Alberto
García-Rodríguez, Isaías
Benavides, Carmen
Alaiz-Moretón, Héctor
Detecting Respiratory Pathologies Using Convolutional Neural Networks and Variational Autoencoders for Unbalancing Data
title Detecting Respiratory Pathologies Using Convolutional Neural Networks and Variational Autoencoders for Unbalancing Data
title_full Detecting Respiratory Pathologies Using Convolutional Neural Networks and Variational Autoencoders for Unbalancing Data
title_fullStr Detecting Respiratory Pathologies Using Convolutional Neural Networks and Variational Autoencoders for Unbalancing Data
title_full_unstemmed Detecting Respiratory Pathologies Using Convolutional Neural Networks and Variational Autoencoders for Unbalancing Data
title_short Detecting Respiratory Pathologies Using Convolutional Neural Networks and Variational Autoencoders for Unbalancing Data
title_sort detecting respiratory pathologies using convolutional neural networks and variational autoencoders for unbalancing data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7070339/
https://www.ncbi.nlm.nih.gov/pubmed/32098446
http://dx.doi.org/10.3390/s20041214
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