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Portal of Juglandaceae: A comprehensive platform for Juglandaceae study

Juglandaceae species are plants of great economic value and have been cultivated, domesticated, and utilized by human society for a long time. Their edible, nutrient-rich nuts and tough, durable wood have attracted the attention of botanists and breeders. With the advent of the genomics era, genome...

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Autores principales: Guo, Wenlei, Chen, Junhao, Li, Jian, Huang, Jianqin, Wang, Zhengjia, Lim, Kean-Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7072074/
https://www.ncbi.nlm.nih.gov/pubmed/32194971
http://dx.doi.org/10.1038/s41438-020-0256-x
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author Guo, Wenlei
Chen, Junhao
Li, Jian
Huang, Jianqin
Wang, Zhengjia
Lim, Kean-Jin
author_facet Guo, Wenlei
Chen, Junhao
Li, Jian
Huang, Jianqin
Wang, Zhengjia
Lim, Kean-Jin
author_sort Guo, Wenlei
collection PubMed
description Juglandaceae species are plants of great economic value and have been cultivated, domesticated, and utilized by human society for a long time. Their edible, nutrient-rich nuts and tough, durable wood have attracted the attention of botanists and breeders. With the advent of the genomics era, genome sequencing of the Juglandaceae family has been greatly accelerated, and a large amount of data has been generated. In this paper, we introduce the Portal of Juglandaceae (PJU), a tool to bring all these data together. The PJU contains genomes, gene-coding sequences, protein sequences, various types of annotation information, expression data, and miRNA data, which are configured with BLAST, JBrowse, and our self-developed synteny analysis tool. The PJU has a user-friendly and straightforward interface that performs a variety of query tasks with a few simple operations. In the future, we hope that the PJU will serve as a hub for the study of the Juglandaceae family.
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spelling pubmed-70720742020-03-19 Portal of Juglandaceae: A comprehensive platform for Juglandaceae study Guo, Wenlei Chen, Junhao Li, Jian Huang, Jianqin Wang, Zhengjia Lim, Kean-Jin Hortic Res Article Juglandaceae species are plants of great economic value and have been cultivated, domesticated, and utilized by human society for a long time. Their edible, nutrient-rich nuts and tough, durable wood have attracted the attention of botanists and breeders. With the advent of the genomics era, genome sequencing of the Juglandaceae family has been greatly accelerated, and a large amount of data has been generated. In this paper, we introduce the Portal of Juglandaceae (PJU), a tool to bring all these data together. The PJU contains genomes, gene-coding sequences, protein sequences, various types of annotation information, expression data, and miRNA data, which are configured with BLAST, JBrowse, and our self-developed synteny analysis tool. The PJU has a user-friendly and straightforward interface that performs a variety of query tasks with a few simple operations. In the future, we hope that the PJU will serve as a hub for the study of the Juglandaceae family. Nature Publishing Group UK 2020-03-15 /pmc/articles/PMC7072074/ /pubmed/32194971 http://dx.doi.org/10.1038/s41438-020-0256-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Guo, Wenlei
Chen, Junhao
Li, Jian
Huang, Jianqin
Wang, Zhengjia
Lim, Kean-Jin
Portal of Juglandaceae: A comprehensive platform for Juglandaceae study
title Portal of Juglandaceae: A comprehensive platform for Juglandaceae study
title_full Portal of Juglandaceae: A comprehensive platform for Juglandaceae study
title_fullStr Portal of Juglandaceae: A comprehensive platform for Juglandaceae study
title_full_unstemmed Portal of Juglandaceae: A comprehensive platform for Juglandaceae study
title_short Portal of Juglandaceae: A comprehensive platform for Juglandaceae study
title_sort portal of juglandaceae: a comprehensive platform for juglandaceae study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7072074/
https://www.ncbi.nlm.nih.gov/pubmed/32194971
http://dx.doi.org/10.1038/s41438-020-0256-x
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