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Development of microsatellite markers for the perennial plant Tofieldia calyculata
PREMISE: Polymorphic microsatellite markers were developed to study genetic diversity and genetic structure of populations of the locally endangered species Tofieldia calyculata (Tofieldiaceae). METHODS AND RESULTS: Nineteen polymorphic microsatellite loci were developed using DNA‐enriched libraries...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7073322/ https://www.ncbi.nlm.nih.gov/pubmed/32185118 http://dx.doi.org/10.1002/aps3.11327 |
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author | Vlasta, Tomáš Jarošová, Andrea Šurinová, Maria Münzbergová, Zuzana |
author_facet | Vlasta, Tomáš Jarošová, Andrea Šurinová, Maria Münzbergová, Zuzana |
author_sort | Vlasta, Tomáš |
collection | PubMed |
description | PREMISE: Polymorphic microsatellite markers were developed to study genetic diversity and genetic structure of populations of the locally endangered species Tofieldia calyculata (Tofieldiaceae). METHODS AND RESULTS: Nineteen polymorphic microsatellite loci were developed using DNA‐enriched libraries sequenced by Ilumina technology and were then used to genotype 101 individuals from five populations from Austria, Slovakia, Poland, and the Czech Republic. Of the markers tested, 68% were polymorphic in four of the five investigated populations, with one marker polymorphic in all populations. The number of alleles per locus in the populations ranged from one to 11. Levels of observed and expected heterozygosity ranged from 0.00 to 0.75 and from 0.00 to 0.84, respectively. Moreover, six of the 19 loci amplified when tested in the congeneric species T. pusilla. CONCLUSIONS: The 19 newly developed microsatellite markers can be used to describe genetic diversity and population structure of populations of T. calyculata. |
format | Online Article Text |
id | pubmed-7073322 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70733222020-03-17 Development of microsatellite markers for the perennial plant Tofieldia calyculata Vlasta, Tomáš Jarošová, Andrea Šurinová, Maria Münzbergová, Zuzana Appl Plant Sci Primer Notes PREMISE: Polymorphic microsatellite markers were developed to study genetic diversity and genetic structure of populations of the locally endangered species Tofieldia calyculata (Tofieldiaceae). METHODS AND RESULTS: Nineteen polymorphic microsatellite loci were developed using DNA‐enriched libraries sequenced by Ilumina technology and were then used to genotype 101 individuals from five populations from Austria, Slovakia, Poland, and the Czech Republic. Of the markers tested, 68% were polymorphic in four of the five investigated populations, with one marker polymorphic in all populations. The number of alleles per locus in the populations ranged from one to 11. Levels of observed and expected heterozygosity ranged from 0.00 to 0.75 and from 0.00 to 0.84, respectively. Moreover, six of the 19 loci amplified when tested in the congeneric species T. pusilla. CONCLUSIONS: The 19 newly developed microsatellite markers can be used to describe genetic diversity and population structure of populations of T. calyculata. John Wiley and Sons Inc. 2020-03-13 /pmc/articles/PMC7073322/ /pubmed/32185118 http://dx.doi.org/10.1002/aps3.11327 Text en © 2020 Vlasta et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Primer Notes Vlasta, Tomáš Jarošová, Andrea Šurinová, Maria Münzbergová, Zuzana Development of microsatellite markers for the perennial plant Tofieldia calyculata |
title | Development of microsatellite markers for the perennial plant Tofieldia calyculata
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title_full | Development of microsatellite markers for the perennial plant Tofieldia calyculata
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title_fullStr | Development of microsatellite markers for the perennial plant Tofieldia calyculata
|
title_full_unstemmed | Development of microsatellite markers for the perennial plant Tofieldia calyculata
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title_short | Development of microsatellite markers for the perennial plant Tofieldia calyculata
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title_sort | development of microsatellite markers for the perennial plant tofieldia calyculata |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7073322/ https://www.ncbi.nlm.nih.gov/pubmed/32185118 http://dx.doi.org/10.1002/aps3.11327 |
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