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General Guidelines for Sample Preparation Strategies in HR-µMAS NMR-based Metabolomics of Microscopic Specimens

The study of the metabolome within tissues, organisms, cells or biofluids can be carried out by several bioanalytical techniques. Among them, nuclear magnetic resonance (NMR) is one of the principal spectroscopic methods. This is due to a sample rotation technique, high-resolution magic angle spinni...

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Autores principales: Lucas-Torres, Covadonga, Bernard, Thierry, Huber, Gaspard, Berthault, Patrick, Nishiyama, Yusuke, Kandiyal, Pancham S., Elena-Herrmann, Bénédicte, Molin, Laurent, Solari, Florence, Bouzier-Sore, Anne-Karine, Wong, Alan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7073555/
https://www.ncbi.nlm.nih.gov/pubmed/32019176
http://dx.doi.org/10.3390/metabo10020054
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author Lucas-Torres, Covadonga
Bernard, Thierry
Huber, Gaspard
Berthault, Patrick
Nishiyama, Yusuke
Kandiyal, Pancham S.
Elena-Herrmann, Bénédicte
Molin, Laurent
Solari, Florence
Bouzier-Sore, Anne-Karine
Wong, Alan
author_facet Lucas-Torres, Covadonga
Bernard, Thierry
Huber, Gaspard
Berthault, Patrick
Nishiyama, Yusuke
Kandiyal, Pancham S.
Elena-Herrmann, Bénédicte
Molin, Laurent
Solari, Florence
Bouzier-Sore, Anne-Karine
Wong, Alan
author_sort Lucas-Torres, Covadonga
collection PubMed
description The study of the metabolome within tissues, organisms, cells or biofluids can be carried out by several bioanalytical techniques. Among them, nuclear magnetic resonance (NMR) is one of the principal spectroscopic methods. This is due to a sample rotation technique, high-resolution magic angle spinning (HR-MAS), which targets the analysis of heterogeneous specimens with a bulk sample mass from 5 to 10 mg. Recently, a new approach, high-resolution micro-magic angle spinning (HR-μMAS), has been introduced. It opens, for the first time, the possibility of investigating microscopic specimens (<500 μg) with NMR spectroscopy, strengthening the concept of homogeneous sampling in a heterogeneous specimen. As in all bioanalytical approaches, a clean and reliable sample preparation strategy is a significant component in designing metabolomics (or -omics, in general) studies. The sample preparation for HR-μMAS is consequentially complicated by the μg-scale specimen and has yet to be addressed. This report details the strategies for three specimen types: biofluids, fluid matrices and tissues. It also provides the basis for designing future μMAS NMR studies of microscopic specimens.
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spelling pubmed-70735552020-03-20 General Guidelines for Sample Preparation Strategies in HR-µMAS NMR-based Metabolomics of Microscopic Specimens Lucas-Torres, Covadonga Bernard, Thierry Huber, Gaspard Berthault, Patrick Nishiyama, Yusuke Kandiyal, Pancham S. Elena-Herrmann, Bénédicte Molin, Laurent Solari, Florence Bouzier-Sore, Anne-Karine Wong, Alan Metabolites Article The study of the metabolome within tissues, organisms, cells or biofluids can be carried out by several bioanalytical techniques. Among them, nuclear magnetic resonance (NMR) is one of the principal spectroscopic methods. This is due to a sample rotation technique, high-resolution magic angle spinning (HR-MAS), which targets the analysis of heterogeneous specimens with a bulk sample mass from 5 to 10 mg. Recently, a new approach, high-resolution micro-magic angle spinning (HR-μMAS), has been introduced. It opens, for the first time, the possibility of investigating microscopic specimens (<500 μg) with NMR spectroscopy, strengthening the concept of homogeneous sampling in a heterogeneous specimen. As in all bioanalytical approaches, a clean and reliable sample preparation strategy is a significant component in designing metabolomics (or -omics, in general) studies. The sample preparation for HR-μMAS is consequentially complicated by the μg-scale specimen and has yet to be addressed. This report details the strategies for three specimen types: biofluids, fluid matrices and tissues. It also provides the basis for designing future μMAS NMR studies of microscopic specimens. MDPI 2020-01-30 /pmc/articles/PMC7073555/ /pubmed/32019176 http://dx.doi.org/10.3390/metabo10020054 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lucas-Torres, Covadonga
Bernard, Thierry
Huber, Gaspard
Berthault, Patrick
Nishiyama, Yusuke
Kandiyal, Pancham S.
Elena-Herrmann, Bénédicte
Molin, Laurent
Solari, Florence
Bouzier-Sore, Anne-Karine
Wong, Alan
General Guidelines for Sample Preparation Strategies in HR-µMAS NMR-based Metabolomics of Microscopic Specimens
title General Guidelines for Sample Preparation Strategies in HR-µMAS NMR-based Metabolomics of Microscopic Specimens
title_full General Guidelines for Sample Preparation Strategies in HR-µMAS NMR-based Metabolomics of Microscopic Specimens
title_fullStr General Guidelines for Sample Preparation Strategies in HR-µMAS NMR-based Metabolomics of Microscopic Specimens
title_full_unstemmed General Guidelines for Sample Preparation Strategies in HR-µMAS NMR-based Metabolomics of Microscopic Specimens
title_short General Guidelines for Sample Preparation Strategies in HR-µMAS NMR-based Metabolomics of Microscopic Specimens
title_sort general guidelines for sample preparation strategies in hr-µmas nmr-based metabolomics of microscopic specimens
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7073555/
https://www.ncbi.nlm.nih.gov/pubmed/32019176
http://dx.doi.org/10.3390/metabo10020054
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