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In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate

Formaldehyde is a highly reactive compound that participates in multiple spontaneous reactions, but these are mostly deleterious and damage cellular components. In contrast, the spontaneous condensation of formaldehyde with tetrahydrofolate (THF) has been proposed to contribute to the assimilation o...

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Autores principales: He, Hai, Noor, Elad, Ramos-Parra, Perla A., García-Valencia, Liliana E., Patterson, Jenelle A., Díaz de la Garza, Rocío I., Hanson, Andrew D., Bar-Even, Arren
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7073904/
https://www.ncbi.nlm.nih.gov/pubmed/32059429
http://dx.doi.org/10.3390/metabo10020065
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author He, Hai
Noor, Elad
Ramos-Parra, Perla A.
García-Valencia, Liliana E.
Patterson, Jenelle A.
Díaz de la Garza, Rocío I.
Hanson, Andrew D.
Bar-Even, Arren
author_facet He, Hai
Noor, Elad
Ramos-Parra, Perla A.
García-Valencia, Liliana E.
Patterson, Jenelle A.
Díaz de la Garza, Rocío I.
Hanson, Andrew D.
Bar-Even, Arren
author_sort He, Hai
collection PubMed
description Formaldehyde is a highly reactive compound that participates in multiple spontaneous reactions, but these are mostly deleterious and damage cellular components. In contrast, the spontaneous condensation of formaldehyde with tetrahydrofolate (THF) has been proposed to contribute to the assimilation of this intermediate during growth on C(1) carbon sources such as methanol. However, the in vivo rate of this condensation reaction is unknown and its possible contribution to growth remains elusive. Here, we used microbial platforms to assess the rate of this condensation in the cellular environment. We constructed Escherichia coli strains lacking the enzymes that naturally produce 5,10-methylene-THF. These strains were able to grow on minimal medium only when equipped with a sarcosine (N-methyl-glycine) oxidation pathway that sustained a high cellular concentration of formaldehyde, which spontaneously reacts with THF to produce 5,10-methylene-THF. We used flux balance analysis to derive the rate of the spontaneous condensation from the observed growth rate. According to this, we calculated that a microorganism obtaining its entire biomass via the spontaneous condensation of formaldehyde with THF would have a doubling time of more than three weeks. Hence, this spontaneous reaction is unlikely to serve as an effective route for formaldehyde assimilation.
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spelling pubmed-70739042020-03-19 In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate He, Hai Noor, Elad Ramos-Parra, Perla A. García-Valencia, Liliana E. Patterson, Jenelle A. Díaz de la Garza, Rocío I. Hanson, Andrew D. Bar-Even, Arren Metabolites Article Formaldehyde is a highly reactive compound that participates in multiple spontaneous reactions, but these are mostly deleterious and damage cellular components. In contrast, the spontaneous condensation of formaldehyde with tetrahydrofolate (THF) has been proposed to contribute to the assimilation of this intermediate during growth on C(1) carbon sources such as methanol. However, the in vivo rate of this condensation reaction is unknown and its possible contribution to growth remains elusive. Here, we used microbial platforms to assess the rate of this condensation in the cellular environment. We constructed Escherichia coli strains lacking the enzymes that naturally produce 5,10-methylene-THF. These strains were able to grow on minimal medium only when equipped with a sarcosine (N-methyl-glycine) oxidation pathway that sustained a high cellular concentration of formaldehyde, which spontaneously reacts with THF to produce 5,10-methylene-THF. We used flux balance analysis to derive the rate of the spontaneous condensation from the observed growth rate. According to this, we calculated that a microorganism obtaining its entire biomass via the spontaneous condensation of formaldehyde with THF would have a doubling time of more than three weeks. Hence, this spontaneous reaction is unlikely to serve as an effective route for formaldehyde assimilation. MDPI 2020-02-12 /pmc/articles/PMC7073904/ /pubmed/32059429 http://dx.doi.org/10.3390/metabo10020065 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
He, Hai
Noor, Elad
Ramos-Parra, Perla A.
García-Valencia, Liliana E.
Patterson, Jenelle A.
Díaz de la Garza, Rocío I.
Hanson, Andrew D.
Bar-Even, Arren
In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate
title In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate
title_full In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate
title_fullStr In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate
title_full_unstemmed In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate
title_short In Vivo Rate of Formaldehyde Condensation with Tetrahydrofolate
title_sort in vivo rate of formaldehyde condensation with tetrahydrofolate
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7073904/
https://www.ncbi.nlm.nih.gov/pubmed/32059429
http://dx.doi.org/10.3390/metabo10020065
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