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Selection of the Reference Gene for Expression Normalization in Papaver somniferum L. under Abiotic Stress and Hormone Treatment

Papaver somniferum L. is an important medical plant that produces analgesic drugs used for the pain caused by cancers and surgeries. Recent studies have focused on the expression genes involved in analgesic drugs biosynthesis, and the real-time quantitative polymerase chain reaction (RT-qPCR) techni...

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Autores principales: Zhang, Zhaoping, Li, Changjian, Zhang, Junqing, Chen, Fang, Gong, Yongfu, Li, Yanrong, Su, Yujie, Wei, Yujie, Zhao, Yucheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7074096/
https://www.ncbi.nlm.nih.gov/pubmed/31979407
http://dx.doi.org/10.3390/genes11020124
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author Zhang, Zhaoping
Li, Changjian
Zhang, Junqing
Chen, Fang
Gong, Yongfu
Li, Yanrong
Su, Yujie
Wei, Yujie
Zhao, Yucheng
author_facet Zhang, Zhaoping
Li, Changjian
Zhang, Junqing
Chen, Fang
Gong, Yongfu
Li, Yanrong
Su, Yujie
Wei, Yujie
Zhao, Yucheng
author_sort Zhang, Zhaoping
collection PubMed
description Papaver somniferum L. is an important medical plant that produces analgesic drugs used for the pain caused by cancers and surgeries. Recent studies have focused on the expression genes involved in analgesic drugs biosynthesis, and the real-time quantitative polymerase chain reaction (RT-qPCR) technique is the main strategy. However, no reference genes have been reported for gene expression normalization in P. somniferum. Herein, nine reference genes (actin (ACT), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), cyclophilin 2 (CYP2), elongation factor 1-alpha (EF-1α), glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic (GAPC2), nuclear cap-binding protein subunit 2 (NCBP2), protein phosphatase 2A (PP2A), TIP41-like protein (TIP41), and tubulin beta chain (TUB)) of P. somniferum were selected and analyzed under five different treatments (cold, drought, salt, heavy metal, and hormone stress). Then, BestKeeper, NormFinder, geNorm, and RefFinder were employed to analyze their gene expression stability. The results reveal that NCBP2 is the most stable reference gene under various experimental conditions. The work described here is the first report regarding on reference gene selection in P. somniferum, which could be used for the accurate normalization of the gene expression involved in analgesic drug biosynthesis.
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spelling pubmed-70740962020-03-19 Selection of the Reference Gene for Expression Normalization in Papaver somniferum L. under Abiotic Stress and Hormone Treatment Zhang, Zhaoping Li, Changjian Zhang, Junqing Chen, Fang Gong, Yongfu Li, Yanrong Su, Yujie Wei, Yujie Zhao, Yucheng Genes (Basel) Article Papaver somniferum L. is an important medical plant that produces analgesic drugs used for the pain caused by cancers and surgeries. Recent studies have focused on the expression genes involved in analgesic drugs biosynthesis, and the real-time quantitative polymerase chain reaction (RT-qPCR) technique is the main strategy. However, no reference genes have been reported for gene expression normalization in P. somniferum. Herein, nine reference genes (actin (ACT), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), cyclophilin 2 (CYP2), elongation factor 1-alpha (EF-1α), glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic (GAPC2), nuclear cap-binding protein subunit 2 (NCBP2), protein phosphatase 2A (PP2A), TIP41-like protein (TIP41), and tubulin beta chain (TUB)) of P. somniferum were selected and analyzed under five different treatments (cold, drought, salt, heavy metal, and hormone stress). Then, BestKeeper, NormFinder, geNorm, and RefFinder were employed to analyze their gene expression stability. The results reveal that NCBP2 is the most stable reference gene under various experimental conditions. The work described here is the first report regarding on reference gene selection in P. somniferum, which could be used for the accurate normalization of the gene expression involved in analgesic drug biosynthesis. MDPI 2020-01-23 /pmc/articles/PMC7074096/ /pubmed/31979407 http://dx.doi.org/10.3390/genes11020124 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Zhaoping
Li, Changjian
Zhang, Junqing
Chen, Fang
Gong, Yongfu
Li, Yanrong
Su, Yujie
Wei, Yujie
Zhao, Yucheng
Selection of the Reference Gene for Expression Normalization in Papaver somniferum L. under Abiotic Stress and Hormone Treatment
title Selection of the Reference Gene for Expression Normalization in Papaver somniferum L. under Abiotic Stress and Hormone Treatment
title_full Selection of the Reference Gene for Expression Normalization in Papaver somniferum L. under Abiotic Stress and Hormone Treatment
title_fullStr Selection of the Reference Gene for Expression Normalization in Papaver somniferum L. under Abiotic Stress and Hormone Treatment
title_full_unstemmed Selection of the Reference Gene for Expression Normalization in Papaver somniferum L. under Abiotic Stress and Hormone Treatment
title_short Selection of the Reference Gene for Expression Normalization in Papaver somniferum L. under Abiotic Stress and Hormone Treatment
title_sort selection of the reference gene for expression normalization in papaver somniferum l. under abiotic stress and hormone treatment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7074096/
https://www.ncbi.nlm.nih.gov/pubmed/31979407
http://dx.doi.org/10.3390/genes11020124
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