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Whole-Genome k-mer Topic Modeling Associates Bacterial Families

Alignment-free k-mer-based algorithms in whole genome sequence comparisons remain an ongoing challenge. Here, we explore the possibility to use Topic Modeling for organism whole-genome comparisons. We analyzed 30 complete genomes from three bacterial families by topic modeling. For this, each genome...

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Detalles Bibliográficos
Autores principales:	Borrayo, Ernesto, May-Canche, Isaias, Paredes, Omar, Morales, J. Alejandro, Romo-Vázquez, Rebeca, Vélez-Pérez, Hugo
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Brief Report
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7074292/ https://www.ncbi.nlm.nih.gov/pubmed/32075081 http://dx.doi.org/10.3390/genes11020197

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