Cargando…

Evaluation of A Phylogenetic Pipeline to Examine Transmission Networks in A Canadian HIV Cohort

Modern computational methods using patient Human Immunodeficiency Virus type 1 (HIV-1) genetic sequences can model population-wide viral transmission dynamics. Accurate transmission inferences can play a critical role in the characterization of high-risk transmission clusters important for enhanced...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mak, Lauren, Perera, Deshan, Lang, Raynell, Kossinna, Pathum, He, Jingni, Gill, M. John, Long, Quan, van Marle, Guido
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7074708/ https://www.ncbi.nlm.nih.gov/pubmed/32023939 http://dx.doi.org/10.3390/microorganisms8020196

Ejemplares similares

Reconstructing SARS-CoV-2 infection dynamics through the phylogenetic inference of unsampled sources of infection
por: Perera, Deshan, et al.
Publicado: (2021)

Stabilized COre gene and Pathway Election uncovers pan-cancer shared pathways and a cancer-specific driver
por: Kossinna, Pathum, et al.
Publicado: (2022)

XA4C: eXplainable representation learning via Autoencoders revealing Critical genes
por: Li, Qing, et al.
Publicado: (2023)

Incident Syphilis Infections in an HIV Population: Presentation and Care
por: Lang, Raynell, et al.
Publicado: (2017)

Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding
por: Cao, Chen, et al.
Publicado: (2021)

2505. Incidence of Transmitted Drug Resistance and Its Clinical Implications Between 1999 and 2018 in a Regional HIV Population
por: Lang, Raynell, et al.
Publicado: (2019)

2265. The Changing Landscape of AIDS Defining CNS Infections in S. Alberta, Canada Over 30 Years
por: Lang, Raynell, et al.
Publicado: (2018)

SNAPPy: A snakemake pipeline for scalable HIV-1 subtyping by phylogenetic pairing
por: Araújo, Pedro M M, et al.
Publicado: (2019)

Hal: an Automated Pipeline for Phylogenetic Analyses of Genomic Data
por: Robbertse, Barbara, et al.
Publicado: (2011)

Longitudinal evaluation of risk factors and outcomes of blood stream infections due to Staphylococcus species in persons with HIV: An observational cohort study
por: Lang, Raynell, et al.
Publicado: (2020)

Risk Factors and Outcomes of Bloodstream Infections Among People With Human Immunodeficiency Virus: A Longitudinal Cohort Study From 2000 to 2017
por: Lang, Raynell, et al.
Publicado: (2022)

PhyloPi: An affordable, purpose built phylogenetic pipeline for the HIV drug resistance testing facility
por: Bester, Phillip Armand, et al.
Publicado: (2019)

A retrospective study of the clinical features of new syphilis infections in an HIV-positive cohort in Alberta, Canada
por: Lang, Raynell, et al.
Publicado: (2018)

Tuberculosis transmission in the Indigenous peoples of the Canadian prairies
por: Patel, Smit, et al.
Publicado: (2017)

Increasing incidence of syphilis among patients engaged in HIV care in Alberta, Canada: a retrospective clinic-based cohort study
por: Lang, Raynell, et al.
Publicado: (2018)

A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species
por: Redelings, Benjamin D., et al.
Publicado: (2017)

PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees
por: Fang, Yang, et al.
Publicado: (2019)

Occupational injury trends in the Canadian workforce: An examination of the Canadian community health survey
por: Nowrouzi-Kia, Behdin, et al.
Publicado: (2019)

Phylogenetic analysis of porcine circovirus 3 circulating in Canadian pigs
por: Zhang, Maodong, et al.
Publicado: (2022)

Canadian consensus statement on HIV and its transmission in the context of criminal law
por: Loutfy, Mona, et al.
Publicado: (2014)

Corrosion Failure Mechanism of Associated Gas Transmission Pipeline
por: Zhao, Weimin, et al.
Publicado: (2018)

A23 Large phylogenetic clusters highlight the HIV-1 epidemic in Canadian at risk populations
por: Capina, Rupert, et al.
Publicado: (2018)

TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets
por: Zhang, Xi, et al.
Publicado: (2022)

Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs
por: Villabona-Arenas, Christian Julian, et al.
Publicado: (2022)

An examination of the role of the Canadian Journal of Respiratory Therapy
por: Nickerson, Jason
Publicado: (2013)

Inferring HIV Transmission Dynamics from Phylogenetic Sequence Relationships
por: Pilcher, Christopher D, et al.
Publicado: (2008)

Inference of Transmission Network Structure from HIV Phylogenetic Trees
por: Giardina, Federica, et al.
Publicado: (2017)

Piping and pipeline calculations manual: construction, design fabrication and examination
por: Ellenberger, Philip
Publicado: (2010)

A Case of Long-Term Seronegative Human Immunodeficiency Virus (HIV) Infection: The Importance of the Humoral Response to HIV
por: Siemieniuk, Reed A. C., et al.
Publicado: (2015)

Seropositivity, Risks, and Morbidity From Varicella-Zoster Virus Infections in an Adult PWH Cohort From 2000–2020
por: Zou, Jason, et al.
Publicado: (2022)

Gastrointestinal Viral Load and Enteroendocrine Cell Number Are Associated with Altered Survival in HIV-1 Infected Individuals
por: van Marle, Guido, et al.
Publicado: (2013)

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
por: Lee, Tae-Ho, et al.
Publicado: (2014)

ORTHOSCOPE*: A Phylogenetic Pipeline to Infer Gene Histories from Genome-Wide Data
por: Inoue, Jun
Publicado: (2021)

Comparative transcriptomics analysis pipeline for the meta-analysis of phylogenetically divergent datasets (CoRMAP)
por: Sheng, Yiru, et al.
Publicado: (2022)

Canadians Adults Fail Their Dietary Quality Examination Twice
por: Ngueta, Gerard, et al.
Publicado: (2023)

Inferring the Source of Transmission with Phylogenetic Data
por: Volz, Erik M., et al.
Publicado: (2013)

Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study
por: Kusejko, Katharina, et al.
Publicado: (2018)

An Empirical Examination of the Effect of COVID-19 Travel Restrictions on Canadians’ Cross-Border Travel and Canadian Retailers
por: Baggs, Jen, et al.
Publicado: (2022)

Disseminated Exophiala dermatitidis causing septic arthritis and osteomyelitis
por: Lang, Raynell, et al.
Publicado: (2018)

An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
por: Wu, Dongying, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_9k0js1ctqcsg1m5qpkt7b8mp5k