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Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation

In many rod-shaped bacteria, the actin homolog MreB directs cell-wall insertion and maintains cell shape, but it remains unclear how structural changes to MreB affect its organization in vivo. Here, we perform molecular dynamics simulations for Caulobacter crescentus MreB to extract mechanical param...

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Autores principales: Shi, Handuo, Quint, David A., Grason, Gregory M., Gopinathan, Ajay, Huang, Kerwyn Casey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7075873/
https://www.ncbi.nlm.nih.gov/pubmed/32179732
http://dx.doi.org/10.1038/s41467-020-14752-9
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author Shi, Handuo
Quint, David A.
Grason, Gregory M.
Gopinathan, Ajay
Huang, Kerwyn Casey
author_facet Shi, Handuo
Quint, David A.
Grason, Gregory M.
Gopinathan, Ajay
Huang, Kerwyn Casey
author_sort Shi, Handuo
collection PubMed
description In many rod-shaped bacteria, the actin homolog MreB directs cell-wall insertion and maintains cell shape, but it remains unclear how structural changes to MreB affect its organization in vivo. Here, we perform molecular dynamics simulations for Caulobacter crescentus MreB to extract mechanical parameters for inputs into a coarse-grained biophysical polymer model that successfully predicts MreB filament properties in vivo. Our analyses indicate that MreB double protofilaments can exhibit left-handed twisting that is dependent on the bound nucleotide and membrane binding; the degree of twisting correlates with the length and orientation of MreB filaments observed in vitro and in vivo. Our molecular dynamics simulations also suggest that membrane binding of MreB double protofilaments induces a stable membrane curvature of similar magnitude to that observed in vivo. Thus, our multiscale modeling correlates cytoskeletal filament size with conformational changes inferred from molecular dynamics simulations, providing a paradigm for connecting protein filament structure and mechanics to cellular organization and function.
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spelling pubmed-70758732020-03-18 Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation Shi, Handuo Quint, David A. Grason, Gregory M. Gopinathan, Ajay Huang, Kerwyn Casey Nat Commun Article In many rod-shaped bacteria, the actin homolog MreB directs cell-wall insertion and maintains cell shape, but it remains unclear how structural changes to MreB affect its organization in vivo. Here, we perform molecular dynamics simulations for Caulobacter crescentus MreB to extract mechanical parameters for inputs into a coarse-grained biophysical polymer model that successfully predicts MreB filament properties in vivo. Our analyses indicate that MreB double protofilaments can exhibit left-handed twisting that is dependent on the bound nucleotide and membrane binding; the degree of twisting correlates with the length and orientation of MreB filaments observed in vitro and in vivo. Our molecular dynamics simulations also suggest that membrane binding of MreB double protofilaments induces a stable membrane curvature of similar magnitude to that observed in vivo. Thus, our multiscale modeling correlates cytoskeletal filament size with conformational changes inferred from molecular dynamics simulations, providing a paradigm for connecting protein filament structure and mechanics to cellular organization and function. Nature Publishing Group UK 2020-03-16 /pmc/articles/PMC7075873/ /pubmed/32179732 http://dx.doi.org/10.1038/s41467-020-14752-9 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Shi, Handuo
Quint, David A.
Grason, Gregory M.
Gopinathan, Ajay
Huang, Kerwyn Casey
Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation
title Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation
title_full Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation
title_fullStr Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation
title_full_unstemmed Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation
title_short Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation
title_sort chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7075873/
https://www.ncbi.nlm.nih.gov/pubmed/32179732
http://dx.doi.org/10.1038/s41467-020-14752-9
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