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Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge‐Based Classification of Interatomic Contacts

Weak noncovalent interactions are responsible for structure and properties of almost all supramolecular systems, such as nucleic acids, enzymes, and pharmaceutical crystals. However, the analysis of their significance and structural role is not straightforward and commonly requires model studies. He...

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Detalles Bibliográficos
Autores principales: Chernyshov, Ivan Yu., Ananyev, Ivan V., Pidko, Evgeny A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7079509/
https://www.ncbi.nlm.nih.gov/pubmed/31912957
http://dx.doi.org/10.1002/cphc.201901083
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author Chernyshov, Ivan Yu.
Ananyev, Ivan V.
Pidko, Evgeny A.
author_facet Chernyshov, Ivan Yu.
Ananyev, Ivan V.
Pidko, Evgeny A.
author_sort Chernyshov, Ivan Yu.
collection PubMed
description Weak noncovalent interactions are responsible for structure and properties of almost all supramolecular systems, such as nucleic acids, enzymes, and pharmaceutical crystals. However, the analysis of their significance and structural role is not straightforward and commonly requires model studies. Herein, we describe an efficient and universal approach for the analysis of noncovalent interactions and determination of van der Waals radii using the line‐of‐sight (LoS) concept. The LoS allows to unambiguously identify and classify the “direct” interatomic contacts in complex molecular systems. This approach not only provides an improved theoretical base to molecular “sizes” but also enables the quantitative analysis of specificity, anisotropy, and steric effects of intermolecular interactions.
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spelling pubmed-70795092020-03-23 Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge‐Based Classification of Interatomic Contacts Chernyshov, Ivan Yu. Ananyev, Ivan V. Pidko, Evgeny A. Chemphyschem Articles Weak noncovalent interactions are responsible for structure and properties of almost all supramolecular systems, such as nucleic acids, enzymes, and pharmaceutical crystals. However, the analysis of their significance and structural role is not straightforward and commonly requires model studies. Herein, we describe an efficient and universal approach for the analysis of noncovalent interactions and determination of van der Waals radii using the line‐of‐sight (LoS) concept. The LoS allows to unambiguously identify and classify the “direct” interatomic contacts in complex molecular systems. This approach not only provides an improved theoretical base to molecular “sizes” but also enables the quantitative analysis of specificity, anisotropy, and steric effects of intermolecular interactions. John Wiley and Sons Inc. 2020-01-23 2020-03-04 /pmc/articles/PMC7079509/ /pubmed/31912957 http://dx.doi.org/10.1002/cphc.201901083 Text en © 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Articles
Chernyshov, Ivan Yu.
Ananyev, Ivan V.
Pidko, Evgeny A.
Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge‐Based Classification of Interatomic Contacts
title Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge‐Based Classification of Interatomic Contacts
title_full Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge‐Based Classification of Interatomic Contacts
title_fullStr Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge‐Based Classification of Interatomic Contacts
title_full_unstemmed Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge‐Based Classification of Interatomic Contacts
title_short Revisiting van der Waals Radii: From Comprehensive Structural Analysis to Knowledge‐Based Classification of Interatomic Contacts
title_sort revisiting van der waals radii: from comprehensive structural analysis to knowledge‐based classification of interatomic contacts
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7079509/
https://www.ncbi.nlm.nih.gov/pubmed/31912957
http://dx.doi.org/10.1002/cphc.201901083
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