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gQSPSim: A SimBiology‐Based GUI for Standardized QSP Model Development and Application

Quantitative systems pharmacology (QSP) models are often implemented using a wide variety of technical workflows and methodologies. To facilitate reproducibility, transparency, portability, and reuse for QSP models, we have developed gQSPSim, a graphical user interface–based MATLAB application that...

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Detalles Bibliográficos
Autores principales: Hosseini, Iraj, Feigelman, Justin, Gajjala, Anita, Susilo, Monica, Ramakrishnan, Vidya, Ramanujan, Saroja, Gadkar, Kapil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7080534/
https://www.ncbi.nlm.nih.gov/pubmed/31957304
http://dx.doi.org/10.1002/psp4.12494
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author Hosseini, Iraj
Feigelman, Justin
Gajjala, Anita
Susilo, Monica
Ramakrishnan, Vidya
Ramanujan, Saroja
Gadkar, Kapil
author_facet Hosseini, Iraj
Feigelman, Justin
Gajjala, Anita
Susilo, Monica
Ramakrishnan, Vidya
Ramanujan, Saroja
Gadkar, Kapil
author_sort Hosseini, Iraj
collection PubMed
description Quantitative systems pharmacology (QSP) models are often implemented using a wide variety of technical workflows and methodologies. To facilitate reproducibility, transparency, portability, and reuse for QSP models, we have developed gQSPSim, a graphical user interface–based MATLAB application that performs key steps in QSP model development and analyses. The capabilities of gQSPSim include (i) model calibration using global and local optimization methods, (ii) development of virtual subjects to explore variability and uncertainty in the represented biology, and (iii) simulations of virtual populations for different interventions. gQSPSim works with SimBiology‐built models using components such as species, doses, variants, and rules. All functionalities are equipped with an interactive visualization interface and the ability to generate presentation‐ready figures. In addition, standardized gQSPSim sessions can be shared and saved for future extension and reuse. In this work, we demonstrate gQSPSim’s capabilities with a standard target‐mediated drug disposition model and a published model of anti‐proprotein convertase subtilisin/kexin type 9 (PCSK9) treatment of hypercholesterolemia.
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spelling pubmed-70805342020-03-19 gQSPSim: A SimBiology‐Based GUI for Standardized QSP Model Development and Application Hosseini, Iraj Feigelman, Justin Gajjala, Anita Susilo, Monica Ramakrishnan, Vidya Ramanujan, Saroja Gadkar, Kapil CPT Pharmacometrics Syst Pharmacol Research Quantitative systems pharmacology (QSP) models are often implemented using a wide variety of technical workflows and methodologies. To facilitate reproducibility, transparency, portability, and reuse for QSP models, we have developed gQSPSim, a graphical user interface–based MATLAB application that performs key steps in QSP model development and analyses. The capabilities of gQSPSim include (i) model calibration using global and local optimization methods, (ii) development of virtual subjects to explore variability and uncertainty in the represented biology, and (iii) simulations of virtual populations for different interventions. gQSPSim works with SimBiology‐built models using components such as species, doses, variants, and rules. All functionalities are equipped with an interactive visualization interface and the ability to generate presentation‐ready figures. In addition, standardized gQSPSim sessions can be shared and saved for future extension and reuse. In this work, we demonstrate gQSPSim’s capabilities with a standard target‐mediated drug disposition model and a published model of anti‐proprotein convertase subtilisin/kexin type 9 (PCSK9) treatment of hypercholesterolemia. John Wiley and Sons Inc. 2020-03-10 2020-03 /pmc/articles/PMC7080534/ /pubmed/31957304 http://dx.doi.org/10.1002/psp4.12494 Text en © 2020 Genentech. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals, Inc. on behalf of the American Society for Clinical Pharmacology and Therapeutics. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research
Hosseini, Iraj
Feigelman, Justin
Gajjala, Anita
Susilo, Monica
Ramakrishnan, Vidya
Ramanujan, Saroja
Gadkar, Kapil
gQSPSim: A SimBiology‐Based GUI for Standardized QSP Model Development and Application
title gQSPSim: A SimBiology‐Based GUI for Standardized QSP Model Development and Application
title_full gQSPSim: A SimBiology‐Based GUI for Standardized QSP Model Development and Application
title_fullStr gQSPSim: A SimBiology‐Based GUI for Standardized QSP Model Development and Application
title_full_unstemmed gQSPSim: A SimBiology‐Based GUI for Standardized QSP Model Development and Application
title_short gQSPSim: A SimBiology‐Based GUI for Standardized QSP Model Development and Application
title_sort gqspsim: a simbiology‐based gui for standardized qsp model development and application
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7080534/
https://www.ncbi.nlm.nih.gov/pubmed/31957304
http://dx.doi.org/10.1002/psp4.12494
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