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Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water
Signal enhancements of up to two orders of magnitude in protein NMR can be achieved by employing HDO as a vector to introduce hyperpolarization into folded or intrinsically disordered proteins. In this approach, hyperpolarized HDO produced by dissolution-dynamic nuclear polarization (D-DNP) is mixed...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7080779/ https://www.ncbi.nlm.nih.gov/pubmed/32040802 http://dx.doi.org/10.1007/s10858-020-00301-5 |
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author | Olsen, Gregory L. Szekely, Or Mateos, Borja Kadeřávek, Pavel Ferrage, Fabien Konrat, Robert Pierattelli, Roberta Felli, Isabella C. Bodenhausen, Geoffrey Kurzbach, Dennis Frydman, Lucio |
author_facet | Olsen, Gregory L. Szekely, Or Mateos, Borja Kadeřávek, Pavel Ferrage, Fabien Konrat, Robert Pierattelli, Roberta Felli, Isabella C. Bodenhausen, Geoffrey Kurzbach, Dennis Frydman, Lucio |
author_sort | Olsen, Gregory L. |
collection | PubMed |
description | Signal enhancements of up to two orders of magnitude in protein NMR can be achieved by employing HDO as a vector to introduce hyperpolarization into folded or intrinsically disordered proteins. In this approach, hyperpolarized HDO produced by dissolution-dynamic nuclear polarization (D-DNP) is mixed with a protein solution waiting in a high-field NMR spectrometer, whereupon amide proton exchange and nuclear Overhauser effects (NOE) transfer hyperpolarization to the protein and enable acquisition of a signal-enhanced high-resolution spectrum. To date, the use of this strategy has been limited to 1D and (1)H-(15)N 2D correlation experiments. Here we introduce 2D (13)C-detected D-DNP, to reduce exchange-induced broadening and other relaxation penalties that can adversely affect proton-detected D-DNP experiments. We also introduce hyperpolarized 3D spectroscopy, opening the possibility of D-DNP studies of larger proteins and IDPs, where assignment and residue-specific investigation may be impeded by spectral crowding. The signal enhancements obtained depend in particular on the rates of chemical and magnetic exchange of the observed residues, thus resulting in non-uniform ‘hyperpolarization-selective’ signal enhancements. The resulting spectral sparsity, however, makes it possible to resolve and monitor individual amino acids in IDPs of over 200 residues at acquisition times of just over a minute. We apply the proposed experiments to two model systems: the compactly folded protein ubiquitin, and the intrinsically disordered protein (IDP) osteopontin (OPN). ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-020-00301-5) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-7080779 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-70807792020-03-23 Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water Olsen, Gregory L. Szekely, Or Mateos, Borja Kadeřávek, Pavel Ferrage, Fabien Konrat, Robert Pierattelli, Roberta Felli, Isabella C. Bodenhausen, Geoffrey Kurzbach, Dennis Frydman, Lucio J Biomol NMR Article Signal enhancements of up to two orders of magnitude in protein NMR can be achieved by employing HDO as a vector to introduce hyperpolarization into folded or intrinsically disordered proteins. In this approach, hyperpolarized HDO produced by dissolution-dynamic nuclear polarization (D-DNP) is mixed with a protein solution waiting in a high-field NMR spectrometer, whereupon amide proton exchange and nuclear Overhauser effects (NOE) transfer hyperpolarization to the protein and enable acquisition of a signal-enhanced high-resolution spectrum. To date, the use of this strategy has been limited to 1D and (1)H-(15)N 2D correlation experiments. Here we introduce 2D (13)C-detected D-DNP, to reduce exchange-induced broadening and other relaxation penalties that can adversely affect proton-detected D-DNP experiments. We also introduce hyperpolarized 3D spectroscopy, opening the possibility of D-DNP studies of larger proteins and IDPs, where assignment and residue-specific investigation may be impeded by spectral crowding. The signal enhancements obtained depend in particular on the rates of chemical and magnetic exchange of the observed residues, thus resulting in non-uniform ‘hyperpolarization-selective’ signal enhancements. The resulting spectral sparsity, however, makes it possible to resolve and monitor individual amino acids in IDPs of over 200 residues at acquisition times of just over a minute. We apply the proposed experiments to two model systems: the compactly folded protein ubiquitin, and the intrinsically disordered protein (IDP) osteopontin (OPN). ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-020-00301-5) contains supplementary material, which is available to authorized users. Springer Netherlands 2020-02-10 2020 /pmc/articles/PMC7080779/ /pubmed/32040802 http://dx.doi.org/10.1007/s10858-020-00301-5 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Olsen, Gregory L. Szekely, Or Mateos, Borja Kadeřávek, Pavel Ferrage, Fabien Konrat, Robert Pierattelli, Roberta Felli, Isabella C. Bodenhausen, Geoffrey Kurzbach, Dennis Frydman, Lucio Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water |
title | Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water |
title_full | Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water |
title_fullStr | Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water |
title_full_unstemmed | Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water |
title_short | Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water |
title_sort | sensitivity-enhanced three-dimensional and carbon-detected two-dimensional nmr of proteins using hyperpolarized water |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7080779/ https://www.ncbi.nlm.nih.gov/pubmed/32040802 http://dx.doi.org/10.1007/s10858-020-00301-5 |
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