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The Joint Analysis of Multi-Omics Data Revealed the Methylation-Expression Regulations in Atrial Fibrillation

Atrial fibrillation (AF) is one of the most prevalent heart rhythm disorder. The causes of AF include age, male sex, diabetes, hypertension, valve disease, and systolic/diastolic dysfunction. But on molecular level, its mechanisms are largely unknown. In this study, we collected 10 patients with per...

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Autores principales: Liu, Ban, Shi, Xin, Ding, Keke, Lv, Mengwei, Qian, Yongjun, Zhu, Shijie, Guo, Changfa, Zhang, Yangyang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7080960/
https://www.ncbi.nlm.nih.gov/pubmed/32226785
http://dx.doi.org/10.3389/fbioe.2020.00187
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author Liu, Ban
Shi, Xin
Ding, Keke
Lv, Mengwei
Qian, Yongjun
Zhu, Shijie
Guo, Changfa
Zhang, Yangyang
author_facet Liu, Ban
Shi, Xin
Ding, Keke
Lv, Mengwei
Qian, Yongjun
Zhu, Shijie
Guo, Changfa
Zhang, Yangyang
author_sort Liu, Ban
collection PubMed
description Atrial fibrillation (AF) is one of the most prevalent heart rhythm disorder. The causes of AF include age, male sex, diabetes, hypertension, valve disease, and systolic/diastolic dysfunction. But on molecular level, its mechanisms are largely unknown. In this study, we collected 10 patients with persistent atrial fibrillation, 10 patients with paroxymal atrial fibrillation and 10 healthy individuals and did Methylation EPICBead Chip and RNA sequencing. By analyzing the methylation and gene expression data using machine learning based feature selection method Boruta, we identified the key genes that were strongly associated with AF and found their interconnections. The results suggested that the methylation of KIF15 may regulate the expression of PSMC3, TINAG, and NUDT6. The identified AF associated methylation-expression regulations may help understand the molecular mechanisms of AF from a multi-omics perspective.
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spelling pubmed-70809602020-03-27 The Joint Analysis of Multi-Omics Data Revealed the Methylation-Expression Regulations in Atrial Fibrillation Liu, Ban Shi, Xin Ding, Keke Lv, Mengwei Qian, Yongjun Zhu, Shijie Guo, Changfa Zhang, Yangyang Front Bioeng Biotechnol Bioengineering and Biotechnology Atrial fibrillation (AF) is one of the most prevalent heart rhythm disorder. The causes of AF include age, male sex, diabetes, hypertension, valve disease, and systolic/diastolic dysfunction. But on molecular level, its mechanisms are largely unknown. In this study, we collected 10 patients with persistent atrial fibrillation, 10 patients with paroxymal atrial fibrillation and 10 healthy individuals and did Methylation EPICBead Chip and RNA sequencing. By analyzing the methylation and gene expression data using machine learning based feature selection method Boruta, we identified the key genes that were strongly associated with AF and found their interconnections. The results suggested that the methylation of KIF15 may regulate the expression of PSMC3, TINAG, and NUDT6. The identified AF associated methylation-expression regulations may help understand the molecular mechanisms of AF from a multi-omics perspective. Frontiers Media S.A. 2020-03-12 /pmc/articles/PMC7080960/ /pubmed/32226785 http://dx.doi.org/10.3389/fbioe.2020.00187 Text en Copyright © 2020 Liu, Shi, Ding, Lv, Qian, Zhu, Guo and Zhang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
Liu, Ban
Shi, Xin
Ding, Keke
Lv, Mengwei
Qian, Yongjun
Zhu, Shijie
Guo, Changfa
Zhang, Yangyang
The Joint Analysis of Multi-Omics Data Revealed the Methylation-Expression Regulations in Atrial Fibrillation
title The Joint Analysis of Multi-Omics Data Revealed the Methylation-Expression Regulations in Atrial Fibrillation
title_full The Joint Analysis of Multi-Omics Data Revealed the Methylation-Expression Regulations in Atrial Fibrillation
title_fullStr The Joint Analysis of Multi-Omics Data Revealed the Methylation-Expression Regulations in Atrial Fibrillation
title_full_unstemmed The Joint Analysis of Multi-Omics Data Revealed the Methylation-Expression Regulations in Atrial Fibrillation
title_short The Joint Analysis of Multi-Omics Data Revealed the Methylation-Expression Regulations in Atrial Fibrillation
title_sort joint analysis of multi-omics data revealed the methylation-expression regulations in atrial fibrillation
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7080960/
https://www.ncbi.nlm.nih.gov/pubmed/32226785
http://dx.doi.org/10.3389/fbioe.2020.00187
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