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Collagen type VI α5 gene variations may predict the risk of lung cancer development in Chinese Han population
The abundant expression of collagen type VI α5 (COL6A5) exists in lung tissue, and its role in lung cancer is still unknown. We performed a genetic association study with an attempt to detect the relationships between single nucleotide polymorphisms (SNPs) in COL6A5 and lung cancer predisposition in...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7081318/ https://www.ncbi.nlm.nih.gov/pubmed/32193401 http://dx.doi.org/10.1038/s41598-020-61614-x |
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author | Duan, Ying Liu, Gaowen Sun, Yao Wu, Jiamin Xiong, Zichao Jin, Tianbo Chen, Mingwei |
author_facet | Duan, Ying Liu, Gaowen Sun, Yao Wu, Jiamin Xiong, Zichao Jin, Tianbo Chen, Mingwei |
author_sort | Duan, Ying |
collection | PubMed |
description | The abundant expression of collagen type VI α5 (COL6A5) exists in lung tissue, and its role in lung cancer is still unknown. We performed a genetic association study with an attempt to detect the relationships between single nucleotide polymorphisms (SNPs) in COL6A5 and lung cancer predisposition in Chinese Han population. We finally selected six tag-SNPs to determine their genotypes among 510 lung cancer patients and 495 healthy controls with the MassARRAY platform. The associations of SNPs and lung cancer risk were estimated by logistic regression method with adjustment for confounding factors. Two available databases were used for gene expression and prognosis analysis. COL6A5 rs13062453, rs1497305, and rs77123808 were significantly associated with the risk of lung cancer in the whole population or stratified subgroups (p < 0.05). Among them, COL6A5 rs13062453 and rs1497305 were also linked to the susceptibility of lung adenocarcinoma. Additionally, rs1497305 was found to be strongly related to the TNM staging under five genetic models (p < 0.05). Results from databases suggested the important role of COL6A5 in lung cancer development. COL6A5 polymorphisms rs13062453, rs1497305 and rs77123808 were associated with lung cancer risk in Chinese Han population. These findings first yield new insight of COL6A5 in lung cancer. |
format | Online Article Text |
id | pubmed-7081318 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70813182020-03-23 Collagen type VI α5 gene variations may predict the risk of lung cancer development in Chinese Han population Duan, Ying Liu, Gaowen Sun, Yao Wu, Jiamin Xiong, Zichao Jin, Tianbo Chen, Mingwei Sci Rep Article The abundant expression of collagen type VI α5 (COL6A5) exists in lung tissue, and its role in lung cancer is still unknown. We performed a genetic association study with an attempt to detect the relationships between single nucleotide polymorphisms (SNPs) in COL6A5 and lung cancer predisposition in Chinese Han population. We finally selected six tag-SNPs to determine their genotypes among 510 lung cancer patients and 495 healthy controls with the MassARRAY platform. The associations of SNPs and lung cancer risk were estimated by logistic regression method with adjustment for confounding factors. Two available databases were used for gene expression and prognosis analysis. COL6A5 rs13062453, rs1497305, and rs77123808 were significantly associated with the risk of lung cancer in the whole population or stratified subgroups (p < 0.05). Among them, COL6A5 rs13062453 and rs1497305 were also linked to the susceptibility of lung adenocarcinoma. Additionally, rs1497305 was found to be strongly related to the TNM staging under five genetic models (p < 0.05). Results from databases suggested the important role of COL6A5 in lung cancer development. COL6A5 polymorphisms rs13062453, rs1497305 and rs77123808 were associated with lung cancer risk in Chinese Han population. These findings first yield new insight of COL6A5 in lung cancer. Nature Publishing Group UK 2020-03-19 /pmc/articles/PMC7081318/ /pubmed/32193401 http://dx.doi.org/10.1038/s41598-020-61614-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Duan, Ying Liu, Gaowen Sun, Yao Wu, Jiamin Xiong, Zichao Jin, Tianbo Chen, Mingwei Collagen type VI α5 gene variations may predict the risk of lung cancer development in Chinese Han population |
title | Collagen type VI α5 gene variations may predict the risk of lung cancer development in Chinese Han population |
title_full | Collagen type VI α5 gene variations may predict the risk of lung cancer development in Chinese Han population |
title_fullStr | Collagen type VI α5 gene variations may predict the risk of lung cancer development in Chinese Han population |
title_full_unstemmed | Collagen type VI α5 gene variations may predict the risk of lung cancer development in Chinese Han population |
title_short | Collagen type VI α5 gene variations may predict the risk of lung cancer development in Chinese Han population |
title_sort | collagen type vi α5 gene variations may predict the risk of lung cancer development in chinese han population |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7081318/ https://www.ncbi.nlm.nih.gov/pubmed/32193401 http://dx.doi.org/10.1038/s41598-020-61614-x |
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