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Reproducibility warning: The curious case of polyethylene glycol 6000 and spheroid cell culture

Reproducibility of results is essential for a well-designed and conducted experiment. Several reasons may originate failure in reproducing data, such as selective reporting, low statistical power, or poor analysis. In this study, we used PEG6000 samples from different distributors and tested their c...

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Autores principales: Serrati, Simona, Martinelli, Chiara, Palazzo, Antonio, Iacobazzi, Rosa Maria, Perrone, Mara, Ong, Quy K., Luo, Zhi, Bekdemir, Ahmet, Pinto, Giulia, Cavalleri, Ornella, Cutrignelli, Annalisa, Laquintana, Valentino, Denora, Nunzio, Stellacci, Francesco, Krol, Silke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7082040/
https://www.ncbi.nlm.nih.gov/pubmed/32191706
http://dx.doi.org/10.1371/journal.pone.0224002
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author Serrati, Simona
Martinelli, Chiara
Palazzo, Antonio
Iacobazzi, Rosa Maria
Perrone, Mara
Ong, Quy K.
Luo, Zhi
Bekdemir, Ahmet
Pinto, Giulia
Cavalleri, Ornella
Cutrignelli, Annalisa
Laquintana, Valentino
Denora, Nunzio
Stellacci, Francesco
Krol, Silke
author_facet Serrati, Simona
Martinelli, Chiara
Palazzo, Antonio
Iacobazzi, Rosa Maria
Perrone, Mara
Ong, Quy K.
Luo, Zhi
Bekdemir, Ahmet
Pinto, Giulia
Cavalleri, Ornella
Cutrignelli, Annalisa
Laquintana, Valentino
Denora, Nunzio
Stellacci, Francesco
Krol, Silke
author_sort Serrati, Simona
collection PubMed
description Reproducibility of results is essential for a well-designed and conducted experiment. Several reasons may originate failure in reproducing data, such as selective reporting, low statistical power, or poor analysis. In this study, we used PEG6000 samples from different distributors and tested their capability inducing spheroid formation upon surface coating. MALDI-MS, NMR, FTIR, and Triple SEC analysis of the different PEG60000s showed nearly identical physicochemical properties different, with only minor differences in mass and hydrodynamic radius, and AFM analysis showed no significant differences in the surface coatings obtained with the available PEG6000s. Despite these similarities, just one showed a highly reproducible formation of spheroids with different cell lines, such as HT-29, HeLa, Caco2, and PANC-1. Using the peculiar PEG6000 sample and a reference PEG6000 chosen amongst the others as control, we tested the effect of the cell/PEG interaction by incubating cells in the PEG solution prior to cell plating. These experiments indicate that the spheroid formation is due to direct interaction of the polymer with the cells rather than by interaction of cells with the coated surfaces. The experiments point out that for biological entities, such as cells or tissues, even very small differences in impurities or minimal variations in the starting product can have a very strong impact on the reproducibility of data.
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spelling pubmed-70820402020-03-24 Reproducibility warning: The curious case of polyethylene glycol 6000 and spheroid cell culture Serrati, Simona Martinelli, Chiara Palazzo, Antonio Iacobazzi, Rosa Maria Perrone, Mara Ong, Quy K. Luo, Zhi Bekdemir, Ahmet Pinto, Giulia Cavalleri, Ornella Cutrignelli, Annalisa Laquintana, Valentino Denora, Nunzio Stellacci, Francesco Krol, Silke PLoS One Research Article Reproducibility of results is essential for a well-designed and conducted experiment. Several reasons may originate failure in reproducing data, such as selective reporting, low statistical power, or poor analysis. In this study, we used PEG6000 samples from different distributors and tested their capability inducing spheroid formation upon surface coating. MALDI-MS, NMR, FTIR, and Triple SEC analysis of the different PEG60000s showed nearly identical physicochemical properties different, with only minor differences in mass and hydrodynamic radius, and AFM analysis showed no significant differences in the surface coatings obtained with the available PEG6000s. Despite these similarities, just one showed a highly reproducible formation of spheroids with different cell lines, such as HT-29, HeLa, Caco2, and PANC-1. Using the peculiar PEG6000 sample and a reference PEG6000 chosen amongst the others as control, we tested the effect of the cell/PEG interaction by incubating cells in the PEG solution prior to cell plating. These experiments indicate that the spheroid formation is due to direct interaction of the polymer with the cells rather than by interaction of cells with the coated surfaces. The experiments point out that for biological entities, such as cells or tissues, even very small differences in impurities or minimal variations in the starting product can have a very strong impact on the reproducibility of data. Public Library of Science 2020-03-19 /pmc/articles/PMC7082040/ /pubmed/32191706 http://dx.doi.org/10.1371/journal.pone.0224002 Text en © 2020 Serrati et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Serrati, Simona
Martinelli, Chiara
Palazzo, Antonio
Iacobazzi, Rosa Maria
Perrone, Mara
Ong, Quy K.
Luo, Zhi
Bekdemir, Ahmet
Pinto, Giulia
Cavalleri, Ornella
Cutrignelli, Annalisa
Laquintana, Valentino
Denora, Nunzio
Stellacci, Francesco
Krol, Silke
Reproducibility warning: The curious case of polyethylene glycol 6000 and spheroid cell culture
title Reproducibility warning: The curious case of polyethylene glycol 6000 and spheroid cell culture
title_full Reproducibility warning: The curious case of polyethylene glycol 6000 and spheroid cell culture
title_fullStr Reproducibility warning: The curious case of polyethylene glycol 6000 and spheroid cell culture
title_full_unstemmed Reproducibility warning: The curious case of polyethylene glycol 6000 and spheroid cell culture
title_short Reproducibility warning: The curious case of polyethylene glycol 6000 and spheroid cell culture
title_sort reproducibility warning: the curious case of polyethylene glycol 6000 and spheroid cell culture
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7082040/
https://www.ncbi.nlm.nih.gov/pubmed/32191706
http://dx.doi.org/10.1371/journal.pone.0224002
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