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Humanizing Big Data: Recognizing the Human Aspect of Big Data

The term “big data” refers broadly to large volumes of data, often gathered from several sources, that are then analyzed, for example, for predictive analytics. Combining and mining genetic data from varied sources including clinical genetic testing, for example, electronic health records, what migh...

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Autores principales: Helzlsouer, Kathy, Meerzaman, Daoud, Taplin, Stephen, Dunn, Barbara K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7082327/
https://www.ncbi.nlm.nih.gov/pubmed/32231993
http://dx.doi.org/10.3389/fonc.2020.00186
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author Helzlsouer, Kathy
Meerzaman, Daoud
Taplin, Stephen
Dunn, Barbara K.
author_facet Helzlsouer, Kathy
Meerzaman, Daoud
Taplin, Stephen
Dunn, Barbara K.
author_sort Helzlsouer, Kathy
collection PubMed
description The term “big data” refers broadly to large volumes of data, often gathered from several sources, that are then analyzed, for example, for predictive analytics. Combining and mining genetic data from varied sources including clinical genetic testing, for example, electronic health records, what might be termed as “recreational” genetic testing such as ancestry testing, as well as research studies, provide one type of “big data.” Challenges and cautions in analyzing big data include recognizing the lack of systematic collection of the source data, the variety of assay technologies used, the potential variation in classification and interpretation of genetic variants. While advanced technologies such as microarrays and, more recently, next-generation sequencing, that enable testing an individual's DNA for thousands of genes and variants simultaneously are briefly discussed, attention is focused more closely on challenges to analysis of the massive data generated by these genomic technologies. The main theme of this review is to evaluate challenges associated with big data in general and specifically to bring the sophisticated technology of genetic/genomic testing down to the individual level, keeping in mind the human aspect of the data source and considering where the impact of the data will be translated and applied. Considerations in this “humanizing” process include providing adequate counseling and consent for genetic testing in all settings, as well as understanding the strengths and limitations of assays and their interpretation.
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spelling pubmed-70823272020-03-30 Humanizing Big Data: Recognizing the Human Aspect of Big Data Helzlsouer, Kathy Meerzaman, Daoud Taplin, Stephen Dunn, Barbara K. Front Oncol Oncology The term “big data” refers broadly to large volumes of data, often gathered from several sources, that are then analyzed, for example, for predictive analytics. Combining and mining genetic data from varied sources including clinical genetic testing, for example, electronic health records, what might be termed as “recreational” genetic testing such as ancestry testing, as well as research studies, provide one type of “big data.” Challenges and cautions in analyzing big data include recognizing the lack of systematic collection of the source data, the variety of assay technologies used, the potential variation in classification and interpretation of genetic variants. While advanced technologies such as microarrays and, more recently, next-generation sequencing, that enable testing an individual's DNA for thousands of genes and variants simultaneously are briefly discussed, attention is focused more closely on challenges to analysis of the massive data generated by these genomic technologies. The main theme of this review is to evaluate challenges associated with big data in general and specifically to bring the sophisticated technology of genetic/genomic testing down to the individual level, keeping in mind the human aspect of the data source and considering where the impact of the data will be translated and applied. Considerations in this “humanizing” process include providing adequate counseling and consent for genetic testing in all settings, as well as understanding the strengths and limitations of assays and their interpretation. Frontiers Media S.A. 2020-03-13 /pmc/articles/PMC7082327/ /pubmed/32231993 http://dx.doi.org/10.3389/fonc.2020.00186 Text en Copyright © 2020 Helzlsouer, Meerzaman, Taplin and Dunn. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Helzlsouer, Kathy
Meerzaman, Daoud
Taplin, Stephen
Dunn, Barbara K.
Humanizing Big Data: Recognizing the Human Aspect of Big Data
title Humanizing Big Data: Recognizing the Human Aspect of Big Data
title_full Humanizing Big Data: Recognizing the Human Aspect of Big Data
title_fullStr Humanizing Big Data: Recognizing the Human Aspect of Big Data
title_full_unstemmed Humanizing Big Data: Recognizing the Human Aspect of Big Data
title_short Humanizing Big Data: Recognizing the Human Aspect of Big Data
title_sort humanizing big data: recognizing the human aspect of big data
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7082327/
https://www.ncbi.nlm.nih.gov/pubmed/32231993
http://dx.doi.org/10.3389/fonc.2020.00186
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