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Coloured Noise from Stochastic Inflows in Reaction–Diffusion Systems
In this paper, we present a framework for investigating coloured noise in reaction–diffusion systems. We start by considering a deterministic reaction–diffusion equation and show how external forcing can cause temporally correlated or coloured noise. Here, the main source of external noise is consid...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7083815/ https://www.ncbi.nlm.nih.gov/pubmed/32198538 http://dx.doi.org/10.1007/s11538-020-00719-w |
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author | Adamer, Michael F. Harrington, Heather A. Gaffney, Eamonn A. Woolley, Thomas E. |
author_facet | Adamer, Michael F. Harrington, Heather A. Gaffney, Eamonn A. Woolley, Thomas E. |
author_sort | Adamer, Michael F. |
collection | PubMed |
description | In this paper, we present a framework for investigating coloured noise in reaction–diffusion systems. We start by considering a deterministic reaction–diffusion equation and show how external forcing can cause temporally correlated or coloured noise. Here, the main source of external noise is considered to be fluctuations in the parameter values representing the inflow of particles to the system. First, we determine which reaction systems, driven by extrinsic noise, can admit only one steady state, so that effects, such as stochastic switching, are precluded from our analysis. To analyse the steady-state behaviour of reaction systems, even if the parameter values are changing, necessitates a parameter-free approach, which has been central to algebraic analysis in chemical reaction network theory. To identify suitable models, we use tools from real algebraic geometry that link the network structure to its dynamical properties. We then make a connection to internal noise models and show how power spectral methods can be used to predict stochastically driven patterns in systems with coloured noise. In simple cases, we show that the power spectrum of the coloured noise process and the power spectrum of the reaction–diffusion system modelled with white noise multiply to give the power spectrum of the coloured noise reaction–diffusion system. |
format | Online Article Text |
id | pubmed-7083815 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-70838152020-03-23 Coloured Noise from Stochastic Inflows in Reaction–Diffusion Systems Adamer, Michael F. Harrington, Heather A. Gaffney, Eamonn A. Woolley, Thomas E. Bull Math Biol Original Article In this paper, we present a framework for investigating coloured noise in reaction–diffusion systems. We start by considering a deterministic reaction–diffusion equation and show how external forcing can cause temporally correlated or coloured noise. Here, the main source of external noise is considered to be fluctuations in the parameter values representing the inflow of particles to the system. First, we determine which reaction systems, driven by extrinsic noise, can admit only one steady state, so that effects, such as stochastic switching, are precluded from our analysis. To analyse the steady-state behaviour of reaction systems, even if the parameter values are changing, necessitates a parameter-free approach, which has been central to algebraic analysis in chemical reaction network theory. To identify suitable models, we use tools from real algebraic geometry that link the network structure to its dynamical properties. We then make a connection to internal noise models and show how power spectral methods can be used to predict stochastically driven patterns in systems with coloured noise. In simple cases, we show that the power spectrum of the coloured noise process and the power spectrum of the reaction–diffusion system modelled with white noise multiply to give the power spectrum of the coloured noise reaction–diffusion system. Springer US 2020-03-20 2020 /pmc/articles/PMC7083815/ /pubmed/32198538 http://dx.doi.org/10.1007/s11538-020-00719-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Original Article Adamer, Michael F. Harrington, Heather A. Gaffney, Eamonn A. Woolley, Thomas E. Coloured Noise from Stochastic Inflows in Reaction–Diffusion Systems |
title | Coloured Noise from Stochastic Inflows in Reaction–Diffusion Systems |
title_full | Coloured Noise from Stochastic Inflows in Reaction–Diffusion Systems |
title_fullStr | Coloured Noise from Stochastic Inflows in Reaction–Diffusion Systems |
title_full_unstemmed | Coloured Noise from Stochastic Inflows in Reaction–Diffusion Systems |
title_short | Coloured Noise from Stochastic Inflows in Reaction–Diffusion Systems |
title_sort | coloured noise from stochastic inflows in reaction–diffusion systems |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7083815/ https://www.ncbi.nlm.nih.gov/pubmed/32198538 http://dx.doi.org/10.1007/s11538-020-00719-w |
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