Cargando…

Machine Learning and Feature Selection Applied to SEER Data to Reliably Assess Thyroid Cancer Prognosis

Utilizing historical clinical datasets to guide future treatment choices is beneficial for patients and physicians. Machine learning and feature selection algorithms (namely, Fisher’s discriminant ratio, Kruskal-Wallis’ analysis, and Relief-F) have been combined in this research to analyse a SEER da...

Descripción completa

Detalles Bibliográficos
Autores principales: Mourad, Moustafa, Moubayed, Sami, Dezube, Aaron, Mourad, Youssef, Park, Kyle, Torreblanca-Zanca, Albertina, Torrecilla, José S., Cancilla, John C., Wang, Jiwu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7083829/
https://www.ncbi.nlm.nih.gov/pubmed/32198433
http://dx.doi.org/10.1038/s41598-020-62023-w
_version_ 1783508602861912064
author Mourad, Moustafa
Moubayed, Sami
Dezube, Aaron
Mourad, Youssef
Park, Kyle
Torreblanca-Zanca, Albertina
Torrecilla, José S.
Cancilla, John C.
Wang, Jiwu
author_facet Mourad, Moustafa
Moubayed, Sami
Dezube, Aaron
Mourad, Youssef
Park, Kyle
Torreblanca-Zanca, Albertina
Torrecilla, José S.
Cancilla, John C.
Wang, Jiwu
author_sort Mourad, Moustafa
collection PubMed
description Utilizing historical clinical datasets to guide future treatment choices is beneficial for patients and physicians. Machine learning and feature selection algorithms (namely, Fisher’s discriminant ratio, Kruskal-Wallis’ analysis, and Relief-F) have been combined in this research to analyse a SEER database containing clinical features from de-identified thyroid cancer patients. The data covered 34 unique clinical variables such as patients’ age at diagnosis or information regarding lymph nodes, which were employed to build various novel classifiers to distinguish patients that lived for over 10 years since diagnosis, from those who did not survive at least five years. By properly optimizing supervised neural networks, specifically multilayer perceptrons, using data from large groups of thyroid cancer patients (between 6,756 and 20,344 for different models), we demonstrate that unspecialized and existing medical recording can be reliably turned into power of prediction to help doctors make informed and optimized treatment decisions, as distinguishing patients in terms of prognosis has been achieved with 94.5% accuracy. We also envisage the potential of applying our machine learning strategy to other diseases and purposes such as in designing clinical trials for unmasking the maximum benefits and minimizing risks associated with new drug candidates on given populations.
format Online
Article
Text
id pubmed-7083829
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-70838292020-03-26 Machine Learning and Feature Selection Applied to SEER Data to Reliably Assess Thyroid Cancer Prognosis Mourad, Moustafa Moubayed, Sami Dezube, Aaron Mourad, Youssef Park, Kyle Torreblanca-Zanca, Albertina Torrecilla, José S. Cancilla, John C. Wang, Jiwu Sci Rep Article Utilizing historical clinical datasets to guide future treatment choices is beneficial for patients and physicians. Machine learning and feature selection algorithms (namely, Fisher’s discriminant ratio, Kruskal-Wallis’ analysis, and Relief-F) have been combined in this research to analyse a SEER database containing clinical features from de-identified thyroid cancer patients. The data covered 34 unique clinical variables such as patients’ age at diagnosis or information regarding lymph nodes, which were employed to build various novel classifiers to distinguish patients that lived for over 10 years since diagnosis, from those who did not survive at least five years. By properly optimizing supervised neural networks, specifically multilayer perceptrons, using data from large groups of thyroid cancer patients (between 6,756 and 20,344 for different models), we demonstrate that unspecialized and existing medical recording can be reliably turned into power of prediction to help doctors make informed and optimized treatment decisions, as distinguishing patients in terms of prognosis has been achieved with 94.5% accuracy. We also envisage the potential of applying our machine learning strategy to other diseases and purposes such as in designing clinical trials for unmasking the maximum benefits and minimizing risks associated with new drug candidates on given populations. Nature Publishing Group UK 2020-03-20 /pmc/articles/PMC7083829/ /pubmed/32198433 http://dx.doi.org/10.1038/s41598-020-62023-w Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Mourad, Moustafa
Moubayed, Sami
Dezube, Aaron
Mourad, Youssef
Park, Kyle
Torreblanca-Zanca, Albertina
Torrecilla, José S.
Cancilla, John C.
Wang, Jiwu
Machine Learning and Feature Selection Applied to SEER Data to Reliably Assess Thyroid Cancer Prognosis
title Machine Learning and Feature Selection Applied to SEER Data to Reliably Assess Thyroid Cancer Prognosis
title_full Machine Learning and Feature Selection Applied to SEER Data to Reliably Assess Thyroid Cancer Prognosis
title_fullStr Machine Learning and Feature Selection Applied to SEER Data to Reliably Assess Thyroid Cancer Prognosis
title_full_unstemmed Machine Learning and Feature Selection Applied to SEER Data to Reliably Assess Thyroid Cancer Prognosis
title_short Machine Learning and Feature Selection Applied to SEER Data to Reliably Assess Thyroid Cancer Prognosis
title_sort machine learning and feature selection applied to seer data to reliably assess thyroid cancer prognosis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7083829/
https://www.ncbi.nlm.nih.gov/pubmed/32198433
http://dx.doi.org/10.1038/s41598-020-62023-w
work_keys_str_mv AT mouradmoustafa machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis
AT moubayedsami machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis
AT dezubeaaron machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis
AT mouradyoussef machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis
AT parkkyle machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis
AT torreblancazancaalbertina machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis
AT torrecillajoses machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis
AT cancillajohnc machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis
AT wangjiwu machinelearningandfeatureselectionappliedtoseerdatatoreliablyassessthyroidcancerprognosis