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Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes

Recent studies have led to considerable advances in the identification of genetic variants associated with type 1 and type 2 diabetes. An approach for converting genetic data into a predictive measure of disease susceptibility is to add the risk effects of loci into a polygenic risk score. In order...

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Autores principales: Padilla-Martínez, Felipe, Collin, Francois, Kwasniewski, Miroslaw, Kretowski, Adam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7084489/
https://www.ncbi.nlm.nih.gov/pubmed/32131491
http://dx.doi.org/10.3390/ijms21051703
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author Padilla-Martínez, Felipe
Collin, Francois
Kwasniewski, Miroslaw
Kretowski, Adam
author_facet Padilla-Martínez, Felipe
Collin, Francois
Kwasniewski, Miroslaw
Kretowski, Adam
author_sort Padilla-Martínez, Felipe
collection PubMed
description Recent studies have led to considerable advances in the identification of genetic variants associated with type 1 and type 2 diabetes. An approach for converting genetic data into a predictive measure of disease susceptibility is to add the risk effects of loci into a polygenic risk score. In order to summarize the recent findings, we conducted a systematic review of studies comparing the accuracy of polygenic risk scores developed during the last two decades. We selected 15 risk scores from three databases (Scopus, Web of Science and PubMed) enrolled in this systematic review. We identified three polygenic risk scores that discriminate between type 1 diabetes patients and healthy people, one that discriminate between type 1 and type 2 diabetes, two that discriminate between type 1 and monogenic diabetes and nine polygenic risk scores that discriminate between type 2 diabetes patients and healthy people. Prediction accuracy of polygenic risk scores was assessed by comparing the area under the curve. The actual benefits, potential obstacles and possible solutions for the implementation of polygenic risk scores in clinical practice were also discussed. Develop strategies to establish the clinical validity of polygenic risk scores by creating a framework for the interpretation of findings and their translation into actual evidence, are the way to demonstrate their utility in medical practice.
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spelling pubmed-70844892020-03-24 Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes Padilla-Martínez, Felipe Collin, Francois Kwasniewski, Miroslaw Kretowski, Adam Int J Mol Sci Review Recent studies have led to considerable advances in the identification of genetic variants associated with type 1 and type 2 diabetes. An approach for converting genetic data into a predictive measure of disease susceptibility is to add the risk effects of loci into a polygenic risk score. In order to summarize the recent findings, we conducted a systematic review of studies comparing the accuracy of polygenic risk scores developed during the last two decades. We selected 15 risk scores from three databases (Scopus, Web of Science and PubMed) enrolled in this systematic review. We identified three polygenic risk scores that discriminate between type 1 diabetes patients and healthy people, one that discriminate between type 1 and type 2 diabetes, two that discriminate between type 1 and monogenic diabetes and nine polygenic risk scores that discriminate between type 2 diabetes patients and healthy people. Prediction accuracy of polygenic risk scores was assessed by comparing the area under the curve. The actual benefits, potential obstacles and possible solutions for the implementation of polygenic risk scores in clinical practice were also discussed. Develop strategies to establish the clinical validity of polygenic risk scores by creating a framework for the interpretation of findings and their translation into actual evidence, are the way to demonstrate their utility in medical practice. MDPI 2020-03-02 /pmc/articles/PMC7084489/ /pubmed/32131491 http://dx.doi.org/10.3390/ijms21051703 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Padilla-Martínez, Felipe
Collin, Francois
Kwasniewski, Miroslaw
Kretowski, Adam
Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes
title Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes
title_full Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes
title_fullStr Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes
title_full_unstemmed Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes
title_short Systematic Review of Polygenic Risk Scores for Type 1 and Type 2 Diabetes
title_sort systematic review of polygenic risk scores for type 1 and type 2 diabetes
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7084489/
https://www.ncbi.nlm.nih.gov/pubmed/32131491
http://dx.doi.org/10.3390/ijms21051703
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