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Research on Multi-Time-Delay Gene Regulation Network Based on Fuzzy Label Propagation
In view of time delay existing in gene regulation, by using the analysis idea and methods of complex network, this paper proposes a multi-time-delay gene regulation network analysis method based on the fuzzy label propagation. The algorithm takes the relative change trend coefficient, the correlatio...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7086440/ https://www.ncbi.nlm.nih.gov/pubmed/32257084 http://dx.doi.org/10.1155/2020/2389527 |
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author | Li, Haigang Zhang, Qian Li, Ming |
author_facet | Li, Haigang Zhang, Qian Li, Ming |
author_sort | Li, Haigang |
collection | PubMed |
description | In view of time delay existing in gene regulation, by using the analysis idea and methods of complex network, this paper proposes a multi-time-delay gene regulation network analysis method based on the fuzzy label propagation. The algorithm takes the relative change trend coefficient, the correlation coefficient, and the mutual information as the similarity measurement indexes for the gene pair, fully reflecting the correlation of gene pairs and simultaneously obtaining the gene regulation relationship and the time delay through the fuzzy label propagation algorithm of the semisupervised learning. Experimental results of the cell cycle-regulated genes of yeast show that the proposed construction method of GRN can not only correctly select potential regulation genes but also provide details about the gene regulator model, thereby more accurately constructing gene regulation network. |
format | Online Article Text |
id | pubmed-7086440 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-70864402020-04-03 Research on Multi-Time-Delay Gene Regulation Network Based on Fuzzy Label Propagation Li, Haigang Zhang, Qian Li, Ming J Healthc Eng Research Article In view of time delay existing in gene regulation, by using the analysis idea and methods of complex network, this paper proposes a multi-time-delay gene regulation network analysis method based on the fuzzy label propagation. The algorithm takes the relative change trend coefficient, the correlation coefficient, and the mutual information as the similarity measurement indexes for the gene pair, fully reflecting the correlation of gene pairs and simultaneously obtaining the gene regulation relationship and the time delay through the fuzzy label propagation algorithm of the semisupervised learning. Experimental results of the cell cycle-regulated genes of yeast show that the proposed construction method of GRN can not only correctly select potential regulation genes but also provide details about the gene regulator model, thereby more accurately constructing gene regulation network. Hindawi 2020-03-11 /pmc/articles/PMC7086440/ /pubmed/32257084 http://dx.doi.org/10.1155/2020/2389527 Text en Copyright © 2020 Haigang Li et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Li, Haigang Zhang, Qian Li, Ming Research on Multi-Time-Delay Gene Regulation Network Based on Fuzzy Label Propagation |
title | Research on Multi-Time-Delay Gene Regulation Network Based on Fuzzy Label Propagation |
title_full | Research on Multi-Time-Delay Gene Regulation Network Based on Fuzzy Label Propagation |
title_fullStr | Research on Multi-Time-Delay Gene Regulation Network Based on Fuzzy Label Propagation |
title_full_unstemmed | Research on Multi-Time-Delay Gene Regulation Network Based on Fuzzy Label Propagation |
title_short | Research on Multi-Time-Delay Gene Regulation Network Based on Fuzzy Label Propagation |
title_sort | research on multi-time-delay gene regulation network based on fuzzy label propagation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7086440/ https://www.ncbi.nlm.nih.gov/pubmed/32257084 http://dx.doi.org/10.1155/2020/2389527 |
work_keys_str_mv | AT lihaigang researchonmultitimedelaygeneregulationnetworkbasedonfuzzylabelpropagation AT zhangqian researchonmultitimedelaygeneregulationnetworkbasedonfuzzylabelpropagation AT liming researchonmultitimedelaygeneregulationnetworkbasedonfuzzylabelpropagation |