Molecular characterization of an infectious bronchitis virus strain isolated from northern China in 2012

This study reports the complete genome sequence of an infectious bronchitis virus (CK/CH/SD/121220, KJ128295) isolated in 2012 from Shandong Province in northern China. The genome is 27,666 nt long, comprising six genes and 5′ and 3′ untranslated regions. The full-length genome of the CK/CH/SD/12122...

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Detalles Bibliográficos
Autores principales: Zhao, Ye, Liu, Xiao-yu, Cheng, Jin-long, Wu, Yan-ping, Zhang, Guo-zhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2014
Materias:
Annotated Sequence Record
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7086801/
https://www.ncbi.nlm.nih.gov/pubmed/25168045
http://dx.doi.org/10.1007/s00705-014-2213-1
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author Zhao, Ye
Liu, Xiao-yu
Cheng, Jin-long
Wu, Yan-ping
Zhang, Guo-zhong
author_facet Zhao, Ye
Liu, Xiao-yu
Cheng, Jin-long
Wu, Yan-ping
Zhang, Guo-zhong
author_sort Zhao, Ye
collection PubMed
description This study reports the complete genome sequence of an infectious bronchitis virus (CK/CH/SD/121220, KJ128295) isolated in 2012 from Shandong Province in northern China. The genome is 27,666 nt long, comprising six genes and 5′ and 3′ untranslated regions. The full-length genome of the CK/CH/SD/121220 isolate had the highest nucleotide sequence identity (96.7 %) to the YX10 strain. Sites of recombination were identified in the genes 1ab, S, 5a, 5b and N, with their putative parental strains belonging to the QX- and YN-type subgroups, which are already circulating in China. Our findings suggest an important role played by recombination in IBV evolution.
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spelling pubmed-70868012020-03-23 Molecular characterization of an infectious bronchitis virus strain isolated from northern China in 2012 Zhao, Ye Liu, Xiao-yu Cheng, Jin-long Wu, Yan-ping Zhang, Guo-zhong Arch Virol Annotated Sequence Record This study reports the complete genome sequence of an infectious bronchitis virus (CK/CH/SD/121220, KJ128295) isolated in 2012 from Shandong Province in northern China. The genome is 27,666 nt long, comprising six genes and 5′ and 3′ untranslated regions. The full-length genome of the CK/CH/SD/121220 isolate had the highest nucleotide sequence identity (96.7 %) to the YX10 strain. Sites of recombination were identified in the genes 1ab, S, 5a, 5b and N, with their putative parental strains belonging to the QX- and YN-type subgroups, which are already circulating in China. Our findings suggest an important role played by recombination in IBV evolution. Springer Vienna 2014-08-29 2014 /pmc/articles/PMC7086801/ /pubmed/25168045 http://dx.doi.org/10.1007/s00705-014-2213-1 Text en © Springer-Verlag Wien 2014 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Annotated Sequence Record
Zhao, Ye
Liu, Xiao-yu
Cheng, Jin-long
Wu, Yan-ping
Zhang, Guo-zhong
Molecular characterization of an infectious bronchitis virus strain isolated from northern China in 2012
title Molecular characterization of an infectious bronchitis virus strain isolated from northern China in 2012
title_full Molecular characterization of an infectious bronchitis virus strain isolated from northern China in 2012
title_fullStr Molecular characterization of an infectious bronchitis virus strain isolated from northern China in 2012
title_full_unstemmed Molecular characterization of an infectious bronchitis virus strain isolated from northern China in 2012
title_short Molecular characterization of an infectious bronchitis virus strain isolated from northern China in 2012
title_sort molecular characterization of an infectious bronchitis virus strain isolated from northern china in 2012
topic Annotated Sequence Record
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7086801/
https://www.ncbi.nlm.nih.gov/pubmed/25168045
http://dx.doi.org/10.1007/s00705-014-2213-1
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