Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015

Porcine deltacoronavirus (PDCoV) in Thailand was first detected in 2015. We performed a retrospective investigation of the presence of PDCoV in intestinal samples collected from piglets with diarrhea in Thailand from 2008 to 2015 using RT-PCR. PDCoV was found to be present as early as February 2013....

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Autores principales: Saeng-chuto, Kepalee, Stott, Christopher J., Wegner, Matthew, Senasuthum, Raweewan, Tantituvanont, Angkana, Nilubol, Dachrit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2017
Materias:
Rapid Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7086972/
https://www.ncbi.nlm.nih.gov/pubmed/28337545
http://dx.doi.org/10.1007/s00705-017-3331-3
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author Saeng-chuto, Kepalee
Stott, Christopher J.
Wegner, Matthew
Senasuthum, Raweewan
Tantituvanont, Angkana
Nilubol, Dachrit
author_facet Saeng-chuto, Kepalee
Stott, Christopher J.
Wegner, Matthew
Senasuthum, Raweewan
Tantituvanont, Angkana
Nilubol, Dachrit
author_sort Saeng-chuto, Kepalee
collection PubMed
description Porcine deltacoronavirus (PDCoV) in Thailand was first detected in 2015. We performed a retrospective investigation of the presence of PDCoV in intestinal samples collected from piglets with diarrhea in Thailand from 2008 to 2015 using RT-PCR. PDCoV was found to be present as early as February 2013. Phylogenetic analysis demonstrated that all PDCoV variants from Thailand differ from those from other countries and belong to a novel group of PDCoV that is separate from the US and Chinese PDCoV variants. Evolutionary analysis suggested that the Thai PDCoV isolates probably diverged from a different ancestor from that of the Chinese and US PDCoV isolates and that this separation occurred after 1994. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00705-017-3331-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-70869722020-03-23 Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015 Saeng-chuto, Kepalee Stott, Christopher J. Wegner, Matthew Senasuthum, Raweewan Tantituvanont, Angkana Nilubol, Dachrit Arch Virol Rapid Communication Porcine deltacoronavirus (PDCoV) in Thailand was first detected in 2015. We performed a retrospective investigation of the presence of PDCoV in intestinal samples collected from piglets with diarrhea in Thailand from 2008 to 2015 using RT-PCR. PDCoV was found to be present as early as February 2013. Phylogenetic analysis demonstrated that all PDCoV variants from Thailand differ from those from other countries and belong to a novel group of PDCoV that is separate from the US and Chinese PDCoV variants. Evolutionary analysis suggested that the Thai PDCoV isolates probably diverged from a different ancestor from that of the Chinese and US PDCoV isolates and that this separation occurred after 1994. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00705-017-3331-3) contains supplementary material, which is available to authorized users. Springer Vienna 2017-03-23 2017 /pmc/articles/PMC7086972/ /pubmed/28337545 http://dx.doi.org/10.1007/s00705-017-3331-3 Text en © Springer-Verlag Wien 2017 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Rapid Communication
Saeng-chuto, Kepalee
Stott, Christopher J.
Wegner, Matthew
Senasuthum, Raweewan
Tantituvanont, Angkana
Nilubol, Dachrit
Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015
title Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015
title_full Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015
title_fullStr Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015
title_full_unstemmed Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015
title_short Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015
title_sort retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in thailand from 2008 to 2015
topic Rapid Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7086972/
https://www.ncbi.nlm.nih.gov/pubmed/28337545
http://dx.doi.org/10.1007/s00705-017-3331-3
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