Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines

To trace the possible route of introduction of porcine epidemic diarrhea virus (PEDV), the phylogenetic relationships of PEDV strains in the regions of epidemicity in the Philippines to PEDV strains that are endemic in other countries were investigated. Partial nucleotide sequences of the S1 spike g...

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Detalles Bibliográficos
Autores principales: Paraguison-Alili, Rubigilda, Domingo, Clarissa Yvonne J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2016
Materias:
Brief Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7087094/
https://www.ncbi.nlm.nih.gov/pubmed/27350060
http://dx.doi.org/10.1007/s00705-016-2938-0
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author Paraguison-Alili, Rubigilda
Domingo, Clarissa Yvonne J.
author_facet Paraguison-Alili, Rubigilda
Domingo, Clarissa Yvonne J.
author_sort Paraguison-Alili, Rubigilda
collection PubMed
description To trace the possible route of introduction of porcine epidemic diarrhea virus (PEDV), the phylogenetic relationships of PEDV strains in the regions of epidemicity in the Philippines to PEDV strains that are endemic in other countries were investigated. Partial nucleotide sequences of the S1 spike gene was determined from the PEDV-positive samples and compared with S1 sequences from other countries. Phylogenetic analysis indicated that PEDV strains in the Philippines segregate into two groups. Members of group 1 are related to strains from the USA, Taiwan, Japan and Canada, while those in group 2 are related to strains from China and Vietnam.
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spelling pubmed-70870942020-03-23 Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines Paraguison-Alili, Rubigilda Domingo, Clarissa Yvonne J. Arch Virol Brief Report To trace the possible route of introduction of porcine epidemic diarrhea virus (PEDV), the phylogenetic relationships of PEDV strains in the regions of epidemicity in the Philippines to PEDV strains that are endemic in other countries were investigated. Partial nucleotide sequences of the S1 spike gene was determined from the PEDV-positive samples and compared with S1 sequences from other countries. Phylogenetic analysis indicated that PEDV strains in the Philippines segregate into two groups. Members of group 1 are related to strains from the USA, Taiwan, Japan and Canada, while those in group 2 are related to strains from China and Vietnam. Springer Vienna 2016-06-28 2016 /pmc/articles/PMC7087094/ /pubmed/27350060 http://dx.doi.org/10.1007/s00705-016-2938-0 Text en © Springer-Verlag Wien 2016 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Brief Report
Paraguison-Alili, Rubigilda
Domingo, Clarissa Yvonne J.
Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines
title Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines
title_full Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines
title_fullStr Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines
title_full_unstemmed Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines
title_short Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines
title_sort phylogenetic tracking of current porcine epidemic diarrhea virus (pedv) strains in the philippines
topic Brief Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7087094/
https://www.ncbi.nlm.nih.gov/pubmed/27350060
http://dx.doi.org/10.1007/s00705-016-2938-0
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