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A novel strain of porcine deltacoronavirus in Vietnam

Two porcine deltacoronavirus (PDCoV) strains (Binh21 and HaNoi6) were isolated from two pig farms in North Vietnam. Phylogenetic analysis of the complete genomes and the Spike and Membrane genes revealed that the two Vietnam PDCoVs belong to the same lineage as PDCoVs from Thailand and Laos; however...

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Autores principales: Le, Van Phan, Song, Sok, An, Byung-Hyun, Park, Gyu-Nam, Pham, Ngoc Thach, Le, Dinh Quyen, Nguyen, Van Tam, Vu, Thi Thu Hang, Kim, Ki-Sun, Choe, SeEun, An, Dong-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7087264/
https://www.ncbi.nlm.nih.gov/pubmed/29022111
http://dx.doi.org/10.1007/s00705-017-3594-8
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author Le, Van Phan
Song, Sok
An, Byung-Hyun
Park, Gyu-Nam
Pham, Ngoc Thach
Le, Dinh Quyen
Nguyen, Van Tam
Vu, Thi Thu Hang
Kim, Ki-Sun
Choe, SeEun
An, Dong-Jun
author_facet Le, Van Phan
Song, Sok
An, Byung-Hyun
Park, Gyu-Nam
Pham, Ngoc Thach
Le, Dinh Quyen
Nguyen, Van Tam
Vu, Thi Thu Hang
Kim, Ki-Sun
Choe, SeEun
An, Dong-Jun
author_sort Le, Van Phan
collection PubMed
description Two porcine deltacoronavirus (PDCoV) strains (Binh21 and HaNoi6) were isolated from two pig farms in North Vietnam. Phylogenetic analysis of the complete genomes and the Spike and Membrane genes revealed that the two Vietnam PDCoVs belong to the same lineage as PDCoVs from Thailand and Laos; however, the N genes belonged to the same lineage as PDCoVs from the USA, Korea, China, and Hong Kong. The recombination detection program subsequently identified the major parent (S5011 strain) and minor parent (HKU15-44 strain) of the two Vietnam PDCoV strains (p < 0.01).
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spelling pubmed-70872642020-03-23 A novel strain of porcine deltacoronavirus in Vietnam Le, Van Phan Song, Sok An, Byung-Hyun Park, Gyu-Nam Pham, Ngoc Thach Le, Dinh Quyen Nguyen, Van Tam Vu, Thi Thu Hang Kim, Ki-Sun Choe, SeEun An, Dong-Jun Arch Virol Brief Report Two porcine deltacoronavirus (PDCoV) strains (Binh21 and HaNoi6) were isolated from two pig farms in North Vietnam. Phylogenetic analysis of the complete genomes and the Spike and Membrane genes revealed that the two Vietnam PDCoVs belong to the same lineage as PDCoVs from Thailand and Laos; however, the N genes belonged to the same lineage as PDCoVs from the USA, Korea, China, and Hong Kong. The recombination detection program subsequently identified the major parent (S5011 strain) and minor parent (HKU15-44 strain) of the two Vietnam PDCoV strains (p < 0.01). Springer Vienna 2017-10-11 2018 /pmc/articles/PMC7087264/ /pubmed/29022111 http://dx.doi.org/10.1007/s00705-017-3594-8 Text en © Springer-Verlag GmbH Austria 2017 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Brief Report
Le, Van Phan
Song, Sok
An, Byung-Hyun
Park, Gyu-Nam
Pham, Ngoc Thach
Le, Dinh Quyen
Nguyen, Van Tam
Vu, Thi Thu Hang
Kim, Ki-Sun
Choe, SeEun
An, Dong-Jun
A novel strain of porcine deltacoronavirus in Vietnam
title A novel strain of porcine deltacoronavirus in Vietnam
title_full A novel strain of porcine deltacoronavirus in Vietnam
title_fullStr A novel strain of porcine deltacoronavirus in Vietnam
title_full_unstemmed A novel strain of porcine deltacoronavirus in Vietnam
title_short A novel strain of porcine deltacoronavirus in Vietnam
title_sort novel strain of porcine deltacoronavirus in vietnam
topic Brief Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7087264/
https://www.ncbi.nlm.nih.gov/pubmed/29022111
http://dx.doi.org/10.1007/s00705-017-3594-8
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