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A novel strain of porcine deltacoronavirus in Vietnam
Two porcine deltacoronavirus (PDCoV) strains (Binh21 and HaNoi6) were isolated from two pig farms in North Vietnam. Phylogenetic analysis of the complete genomes and the Spike and Membrane genes revealed that the two Vietnam PDCoVs belong to the same lineage as PDCoVs from Thailand and Laos; however...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Vienna
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7087264/ https://www.ncbi.nlm.nih.gov/pubmed/29022111 http://dx.doi.org/10.1007/s00705-017-3594-8 |
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author | Le, Van Phan Song, Sok An, Byung-Hyun Park, Gyu-Nam Pham, Ngoc Thach Le, Dinh Quyen Nguyen, Van Tam Vu, Thi Thu Hang Kim, Ki-Sun Choe, SeEun An, Dong-Jun |
author_facet | Le, Van Phan Song, Sok An, Byung-Hyun Park, Gyu-Nam Pham, Ngoc Thach Le, Dinh Quyen Nguyen, Van Tam Vu, Thi Thu Hang Kim, Ki-Sun Choe, SeEun An, Dong-Jun |
author_sort | Le, Van Phan |
collection | PubMed |
description | Two porcine deltacoronavirus (PDCoV) strains (Binh21 and HaNoi6) were isolated from two pig farms in North Vietnam. Phylogenetic analysis of the complete genomes and the Spike and Membrane genes revealed that the two Vietnam PDCoVs belong to the same lineage as PDCoVs from Thailand and Laos; however, the N genes belonged to the same lineage as PDCoVs from the USA, Korea, China, and Hong Kong. The recombination detection program subsequently identified the major parent (S5011 strain) and minor parent (HKU15-44 strain) of the two Vietnam PDCoV strains (p < 0.01). |
format | Online Article Text |
id | pubmed-7087264 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Springer Vienna |
record_format | MEDLINE/PubMed |
spelling | pubmed-70872642020-03-23 A novel strain of porcine deltacoronavirus in Vietnam Le, Van Phan Song, Sok An, Byung-Hyun Park, Gyu-Nam Pham, Ngoc Thach Le, Dinh Quyen Nguyen, Van Tam Vu, Thi Thu Hang Kim, Ki-Sun Choe, SeEun An, Dong-Jun Arch Virol Brief Report Two porcine deltacoronavirus (PDCoV) strains (Binh21 and HaNoi6) were isolated from two pig farms in North Vietnam. Phylogenetic analysis of the complete genomes and the Spike and Membrane genes revealed that the two Vietnam PDCoVs belong to the same lineage as PDCoVs from Thailand and Laos; however, the N genes belonged to the same lineage as PDCoVs from the USA, Korea, China, and Hong Kong. The recombination detection program subsequently identified the major parent (S5011 strain) and minor parent (HKU15-44 strain) of the two Vietnam PDCoV strains (p < 0.01). Springer Vienna 2017-10-11 2018 /pmc/articles/PMC7087264/ /pubmed/29022111 http://dx.doi.org/10.1007/s00705-017-3594-8 Text en © Springer-Verlag GmbH Austria 2017 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Brief Report Le, Van Phan Song, Sok An, Byung-Hyun Park, Gyu-Nam Pham, Ngoc Thach Le, Dinh Quyen Nguyen, Van Tam Vu, Thi Thu Hang Kim, Ki-Sun Choe, SeEun An, Dong-Jun A novel strain of porcine deltacoronavirus in Vietnam |
title | A novel strain of porcine deltacoronavirus in Vietnam |
title_full | A novel strain of porcine deltacoronavirus in Vietnam |
title_fullStr | A novel strain of porcine deltacoronavirus in Vietnam |
title_full_unstemmed | A novel strain of porcine deltacoronavirus in Vietnam |
title_short | A novel strain of porcine deltacoronavirus in Vietnam |
title_sort | novel strain of porcine deltacoronavirus in vietnam |
topic | Brief Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7087264/ https://www.ncbi.nlm.nih.gov/pubmed/29022111 http://dx.doi.org/10.1007/s00705-017-3594-8 |
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