A complexity-based measure and its application to phylogenetic analysis

In this article, we propose two well-defined distance metrics of biological sequences based on a universal complexity profile. To illustrate our metrics, phylogenetic trees of 18 Eutherian mammals from comparison of their mtDNA sequences and 24 coronaviruses using the whole genomes are constructed....

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Detalles Bibliográficos
Autores principales: Zheng, Xiaoqi, Li, Chun, Wang, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2008
Materias:
Original Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7088198/
https://www.ncbi.nlm.nih.gov/pubmed/32214590
http://dx.doi.org/10.1007/s10910-008-9511-3
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author Zheng, Xiaoqi
Li, Chun
Wang, Jun
author_facet Zheng, Xiaoqi
Li, Chun
Wang, Jun
author_sort Zheng, Xiaoqi
collection PubMed
description In this article, we propose two well-defined distance metrics of biological sequences based on a universal complexity profile. To illustrate our metrics, phylogenetic trees of 18 Eutherian mammals from comparison of their mtDNA sequences and 24 coronaviruses using the whole genomes are constructed. The resulting monophyletic clusters agree well with the established taxonomic groups.
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spelling pubmed-70881982020-03-23 A complexity-based measure and its application to phylogenetic analysis Zheng, Xiaoqi Li, Chun Wang, Jun J Math Chem Original Paper In this article, we propose two well-defined distance metrics of biological sequences based on a universal complexity profile. To illustrate our metrics, phylogenetic trees of 18 Eutherian mammals from comparison of their mtDNA sequences and 24 coronaviruses using the whole genomes are constructed. The resulting monophyletic clusters agree well with the established taxonomic groups. Springer Netherlands 2008-12-09 2009 /pmc/articles/PMC7088198/ /pubmed/32214590 http://dx.doi.org/10.1007/s10910-008-9511-3 Text en © Springer Science+Business Media, LLC 2008 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Paper
Zheng, Xiaoqi
Li, Chun
Wang, Jun
A complexity-based measure and its application to phylogenetic analysis
title A complexity-based measure and its application to phylogenetic analysis
title_full A complexity-based measure and its application to phylogenetic analysis
title_fullStr A complexity-based measure and its application to phylogenetic analysis
title_full_unstemmed A complexity-based measure and its application to phylogenetic analysis
title_short A complexity-based measure and its application to phylogenetic analysis
title_sort complexity-based measure and its application to phylogenetic analysis
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7088198/
https://www.ncbi.nlm.nih.gov/pubmed/32214590
http://dx.doi.org/10.1007/s10910-008-9511-3
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