Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring

Up to now, various approaches for phylogenetic analysis have been developed. Almost all of them put stress on analyzing nucleic acid sequences or protein primary sequences. In this paper, we propose a new sequence distance for efficient reconstruction of phylogenetic trees based on the distribution...

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Detalles Bibliográficos
Autores principales: Chang, Guisong, Wang, Tianming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2011
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7088358/
https://www.ncbi.nlm.nih.gov/pubmed/21461804
http://dx.doi.org/10.1007/s10930-011-9318-0
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author Chang, Guisong
Wang, Tianming
author_facet Chang, Guisong
Wang, Tianming
author_sort Chang, Guisong
collection PubMed
description Up to now, various approaches for phylogenetic analysis have been developed. Almost all of them put stress on analyzing nucleic acid sequences or protein primary sequences. In this paper, we propose a new sequence distance for efficient reconstruction of phylogenetic trees based on the distribution of length about common subsequences between two sequences. We describe some applications of this method, which not only show the validity of the method, but also suggest a number of novel phylogenetic insights.
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spelling pubmed-70883582020-03-23 Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring Chang, Guisong Wang, Tianming Protein J Article Up to now, various approaches for phylogenetic analysis have been developed. Almost all of them put stress on analyzing nucleic acid sequences or protein primary sequences. In this paper, we propose a new sequence distance for efficient reconstruction of phylogenetic trees based on the distribution of length about common subsequences between two sequences. We describe some applications of this method, which not only show the validity of the method, but also suggest a number of novel phylogenetic insights. Springer US 2011-03-10 2011 /pmc/articles/PMC7088358/ /pubmed/21461804 http://dx.doi.org/10.1007/s10930-011-9318-0 Text en © Springer Science+Business Media, LLC 2011 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Chang, Guisong
Wang, Tianming
Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring
title Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring
title_full Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring
title_fullStr Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring
title_full_unstemmed Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring
title_short Phylogenetic Analysis of Protein Sequences Based on Distribution of Length About Common Substring
title_sort phylogenetic analysis of protein sequences based on distribution of length about common substring
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7088358/
https://www.ncbi.nlm.nih.gov/pubmed/21461804
http://dx.doi.org/10.1007/s10930-011-9318-0
work_keys_str_mv AT changguisong phylogeneticanalysisofproteinsequencesbasedondistributionoflengthaboutcommonsubstring
AT wangtianming phylogeneticanalysisofproteinsequencesbasedondistributionoflengthaboutcommonsubstring

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