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Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach

In the past few decades, genome-based approaches have contributed significantly to vaccine development. Our aim was to identify the most conserved and immunogenic antigens of Streptococcus pneumoniae, which can be potential vaccine candidates in the future. BLASTn was done to identify the most conse...

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Autores principales: Talukdar, Sandipan, Zutshi, Shubhranshu, Prashanth, K. S., Saikia, Kandarpa K., Kumar, Parveen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7090528/
https://www.ncbi.nlm.nih.gov/pubmed/24482282
http://dx.doi.org/10.1007/s12010-014-0749-x
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author Talukdar, Sandipan
Zutshi, Shubhranshu
Prashanth, K. S.
Saikia, Kandarpa K.
Kumar, Parveen
author_facet Talukdar, Sandipan
Zutshi, Shubhranshu
Prashanth, K. S.
Saikia, Kandarpa K.
Kumar, Parveen
author_sort Talukdar, Sandipan
collection PubMed
description In the past few decades, genome-based approaches have contributed significantly to vaccine development. Our aim was to identify the most conserved and immunogenic antigens of Streptococcus pneumoniae, which can be potential vaccine candidates in the future. BLASTn was done to identify the most conserved antigens. PSORTb 3.0.2 was run to predict the subcellular localization of the proteins. B cell epitope prediction was done for the immunogenicity testing. Finally, BLASTp was done for verifying the extent of similarity to human proteome to exclude the possibility of autoimmunity. Proteins failing to comply with the set parameters were filtered at each step. Based on the above criteria, out of the initial 22 pneumococcal proteins selected for screening, pavB and pullulanase were the most promising candidate proteins.
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spelling pubmed-70905282020-03-24 Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach Talukdar, Sandipan Zutshi, Shubhranshu Prashanth, K. S. Saikia, Kandarpa K. Kumar, Parveen Appl Biochem Biotechnol Article In the past few decades, genome-based approaches have contributed significantly to vaccine development. Our aim was to identify the most conserved and immunogenic antigens of Streptococcus pneumoniae, which can be potential vaccine candidates in the future. BLASTn was done to identify the most conserved antigens. PSORTb 3.0.2 was run to predict the subcellular localization of the proteins. B cell epitope prediction was done for the immunogenicity testing. Finally, BLASTp was done for verifying the extent of similarity to human proteome to exclude the possibility of autoimmunity. Proteins failing to comply with the set parameters were filtered at each step. Based on the above criteria, out of the initial 22 pneumococcal proteins selected for screening, pavB and pullulanase were the most promising candidate proteins. Springer US 2014-01-31 2014 /pmc/articles/PMC7090528/ /pubmed/24482282 http://dx.doi.org/10.1007/s12010-014-0749-x Text en © Springer Science+Business Media New York 2014 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Talukdar, Sandipan
Zutshi, Shubhranshu
Prashanth, K. S.
Saikia, Kandarpa K.
Kumar, Parveen
Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach
title Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach
title_full Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach
title_fullStr Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach
title_full_unstemmed Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach
title_short Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach
title_sort identification of potential vaccine candidates against streptococcus pneumoniae by reverse vaccinology approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7090528/
https://www.ncbi.nlm.nih.gov/pubmed/24482282
http://dx.doi.org/10.1007/s12010-014-0749-x
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