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Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach
In the past few decades, genome-based approaches have contributed significantly to vaccine development. Our aim was to identify the most conserved and immunogenic antigens of Streptococcus pneumoniae, which can be potential vaccine candidates in the future. BLASTn was done to identify the most conse...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7090528/ https://www.ncbi.nlm.nih.gov/pubmed/24482282 http://dx.doi.org/10.1007/s12010-014-0749-x |
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author | Talukdar, Sandipan Zutshi, Shubhranshu Prashanth, K. S. Saikia, Kandarpa K. Kumar, Parveen |
author_facet | Talukdar, Sandipan Zutshi, Shubhranshu Prashanth, K. S. Saikia, Kandarpa K. Kumar, Parveen |
author_sort | Talukdar, Sandipan |
collection | PubMed |
description | In the past few decades, genome-based approaches have contributed significantly to vaccine development. Our aim was to identify the most conserved and immunogenic antigens of Streptococcus pneumoniae, which can be potential vaccine candidates in the future. BLASTn was done to identify the most conserved antigens. PSORTb 3.0.2 was run to predict the subcellular localization of the proteins. B cell epitope prediction was done for the immunogenicity testing. Finally, BLASTp was done for verifying the extent of similarity to human proteome to exclude the possibility of autoimmunity. Proteins failing to comply with the set parameters were filtered at each step. Based on the above criteria, out of the initial 22 pneumococcal proteins selected for screening, pavB and pullulanase were the most promising candidate proteins. |
format | Online Article Text |
id | pubmed-7090528 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-70905282020-03-24 Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach Talukdar, Sandipan Zutshi, Shubhranshu Prashanth, K. S. Saikia, Kandarpa K. Kumar, Parveen Appl Biochem Biotechnol Article In the past few decades, genome-based approaches have contributed significantly to vaccine development. Our aim was to identify the most conserved and immunogenic antigens of Streptococcus pneumoniae, which can be potential vaccine candidates in the future. BLASTn was done to identify the most conserved antigens. PSORTb 3.0.2 was run to predict the subcellular localization of the proteins. B cell epitope prediction was done for the immunogenicity testing. Finally, BLASTp was done for verifying the extent of similarity to human proteome to exclude the possibility of autoimmunity. Proteins failing to comply with the set parameters were filtered at each step. Based on the above criteria, out of the initial 22 pneumococcal proteins selected for screening, pavB and pullulanase were the most promising candidate proteins. Springer US 2014-01-31 2014 /pmc/articles/PMC7090528/ /pubmed/24482282 http://dx.doi.org/10.1007/s12010-014-0749-x Text en © Springer Science+Business Media New York 2014 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Article Talukdar, Sandipan Zutshi, Shubhranshu Prashanth, K. S. Saikia, Kandarpa K. Kumar, Parveen Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach |
title | Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach |
title_full | Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach |
title_fullStr | Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach |
title_full_unstemmed | Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach |
title_short | Identification of Potential Vaccine Candidates Against Streptococcus pneumoniae by Reverse Vaccinology Approach |
title_sort | identification of potential vaccine candidates against streptococcus pneumoniae by reverse vaccinology approach |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7090528/ https://www.ncbi.nlm.nih.gov/pubmed/24482282 http://dx.doi.org/10.1007/s12010-014-0749-x |
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