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Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis

Satellite DNA (satDNA) is an abundant class of tandemly repeated noncoding sequences, showing high rate of change in sequence, abundance, and physical location. However, the mechanisms promoting these changes are still controversial. The library model was put forward to explain the conservation of s...

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Autores principales: Palacios-Gimenez, Octavio M, Milani, Diogo, Song, Hojun, Marti, Dardo A, López-León, Maria D, Ruiz-Ruano, Francisco J, Camacho, Juan Pedro M, Cabral-de-Mello, Diogo C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093836/
https://www.ncbi.nlm.nih.gov/pubmed/32211863
http://dx.doi.org/10.1093/gbe/evaa018
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author Palacios-Gimenez, Octavio M
Milani, Diogo
Song, Hojun
Marti, Dardo A
López-León, Maria D
Ruiz-Ruano, Francisco J
Camacho, Juan Pedro M
Cabral-de-Mello, Diogo C
author_facet Palacios-Gimenez, Octavio M
Milani, Diogo
Song, Hojun
Marti, Dardo A
López-León, Maria D
Ruiz-Ruano, Francisco J
Camacho, Juan Pedro M
Cabral-de-Mello, Diogo C
author_sort Palacios-Gimenez, Octavio M
collection PubMed
description Satellite DNA (satDNA) is an abundant class of tandemly repeated noncoding sequences, showing high rate of change in sequence, abundance, and physical location. However, the mechanisms promoting these changes are still controversial. The library model was put forward to explain the conservation of some satDNAs for long periods, predicting that related species share a common collection of satDNAs, which mostly experience quantitative changes. Here, we tested the library model by analyzing three satDNAs in ten species of Schistocerca grasshoppers. This group represents a valuable material because it diversified during the last 7.9 Myr across the American continent from the African desert locust (Schistocerca gregaria), and this thus illuminates the direction of evolutionary changes. By combining bioinformatic and cytogenetic, we tested whether these three satDNA families found in S. gregaria are also present in nine American species, and whether differential gains and/or losses have occurred in the lineages. We found that the three satDNAs are present in all species but display remarkable interspecies differences in their abundance and sequences while being highly consistent with genus phylogeny. The number of chromosomal loci where satDNA is present was also consistent with phylogeny for two satDNA families but not for the other. Our results suggest eminently chance events for satDNA evolution. Several evolutionary trends clearly imply either massive amplifications or contractions, thus closely fitting the library model prediction that changes are mostly quantitative. Finally, we found that satDNA amplifications or contractions may influence the evolution of monomer consensus sequences and by chance playing a major role in driftlike dynamics.
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spelling pubmed-70938362020-03-30 Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis Palacios-Gimenez, Octavio M Milani, Diogo Song, Hojun Marti, Dardo A López-León, Maria D Ruiz-Ruano, Francisco J Camacho, Juan Pedro M Cabral-de-Mello, Diogo C Genome Biol Evol Research Article Satellite DNA (satDNA) is an abundant class of tandemly repeated noncoding sequences, showing high rate of change in sequence, abundance, and physical location. However, the mechanisms promoting these changes are still controversial. The library model was put forward to explain the conservation of some satDNAs for long periods, predicting that related species share a common collection of satDNAs, which mostly experience quantitative changes. Here, we tested the library model by analyzing three satDNAs in ten species of Schistocerca grasshoppers. This group represents a valuable material because it diversified during the last 7.9 Myr across the American continent from the African desert locust (Schistocerca gregaria), and this thus illuminates the direction of evolutionary changes. By combining bioinformatic and cytogenetic, we tested whether these three satDNA families found in S. gregaria are also present in nine American species, and whether differential gains and/or losses have occurred in the lineages. We found that the three satDNAs are present in all species but display remarkable interspecies differences in their abundance and sequences while being highly consistent with genus phylogeny. The number of chromosomal loci where satDNA is present was also consistent with phylogeny for two satDNA families but not for the other. Our results suggest eminently chance events for satDNA evolution. Several evolutionary trends clearly imply either massive amplifications or contractions, thus closely fitting the library model prediction that changes are mostly quantitative. Finally, we found that satDNA amplifications or contractions may influence the evolution of monomer consensus sequences and by chance playing a major role in driftlike dynamics. Oxford University Press 2020-03-17 /pmc/articles/PMC7093836/ /pubmed/32211863 http://dx.doi.org/10.1093/gbe/evaa018 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Palacios-Gimenez, Octavio M
Milani, Diogo
Song, Hojun
Marti, Dardo A
López-León, Maria D
Ruiz-Ruano, Francisco J
Camacho, Juan Pedro M
Cabral-de-Mello, Diogo C
Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis
title Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis
title_full Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis
title_fullStr Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis
title_full_unstemmed Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis
title_short Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis
title_sort eight million years of satellite dna evolution in grasshoppers of the genus schistocerca illuminate the ins and outs of the library hypothesis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093836/
https://www.ncbi.nlm.nih.gov/pubmed/32211863
http://dx.doi.org/10.1093/gbe/evaa018
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